RNA id: TU98947


Basic Information

Item Value
RNA id TU98947
length 278
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G73361
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13791330 ~ 13794158 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagagagagagagagagagagagagagagagagagagacagggatgGTGGAAGAGATATTGACCCATACAGGGTTAAGAGACCTTTACCTAGGCATgaaatgtagagagagagagagactttgaTGAGGCAACAGATtcacagtgaaagagagagagaaagtgtgtgtgtgagtgtgtgagagagagagagagagagagagagaatgtgaggcAGATATATTGATTAAATTAGGGTTAAGAGACCTTTACCTAGACATTAAaaccaaagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98939 lncRNA upstream 22970 13768125 ~ 13768360 (+) True G73354
TU98910 lncRNA upstream 153628 13637016 ~ 13637702 (+) True G73337
TU98905 lncRNA upstream 281092 13509756 ~ 13510238 (+) True G73332
TU98870 lncRNA upstream 553118 13237960 ~ 13238212 (+) True G73301
TU98867 lncRNA upstream 565375 13225671 ~ 13225955 (+) True G73298
TU98944 lncRNA downstream 34561 13828719 ~ 13830765 (+) True G73359
TU98991 lncRNA downstream 128443 13922601 ~ 13923296 (+) True G73404
TU99013 lncRNA downstream 208914 14003072 ~ 14003426 (+) True G73416
TU99014 lncRNA downstream 210495 14004653 ~ 14005224 (+) True G73417
TU99016 lncRNA downstream 212664 14006822 ~ 14007135 (+) True G73419
XM_007228153.3 mRNA upstream 26280 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 114254 13669622 ~ 13677076 (+) True ehf
XM_007228150.3 mRNA upstream 114489 13662809 ~ 13676841 (+) False ehf
XM_022672163.1 mRNA upstream 114489 13669622 ~ 13676841 (+) False ehf
XM_022672161.1 mRNA upstream 848368 12934452 ~ 12942962 (+) True rag1
XM_022671916.1 mRNA downstream 255 13794413 ~ 13828422 (+) True cd44
XM_007228159.3 mRNA downstream 214474 14008632 ~ 14011720 (+) True fjx1
XM_022672166.1 mRNA downstream 283854 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 443881 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 752639 14546797 ~ 14550920 (+) True rccd1
XR_002650241.1 other upstream 893399 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1187906 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3709190 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4641911 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6905789 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 854671 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1097376 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2492518 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4660693 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5288658 19082816 ~ 19085556 (+) True G74832

Expression Profile