RNA id: TU98957


Basic Information

Item Value
RNA id TU98957
length 2040
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G73371
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13828718 ~ 13830757 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcaAATCTGAAAGATTATGCATGGAAAGATTTATATTTGCTGTGGAGACGCTGCAGGATATAACTCAAGAATAAGCAGAAGCAGAATCATTCAATTCTACTACTTTATGAACCATCACGTCCTGCATTATTCGCAAAGAAGATCACACGCCGCTATCCGTATTTTAAACCAAATTATGCAAAACTCTCATCAAAGTAAACAGAAATATTGTAAATTGCATATGAAAGACAAGAGTGATGTTGCATGAATCTATGATAGCATTTCCTGGACTACTTCTCTTCCAGCATGTTCTTTAATACTATACATTCAcggttttaaaaatacaaacaaatcagTGGTGAGTTCTTAAACATTGCATCATCAACATGAGCCaaaaatgagtttatatttaaactaattAAGGCAATTAATATGACAGTAAGAGAAAGATGAAGGAATGTTTGGAATAAATCTATTCTCTGGACATCGACTTTTAAAAGCTATGATAAACAAGCAAtggtatatacacacacaacattcaAAAAAGCATAAATTAAAGTAGCAACATTTTAttccattaaaagaaaaaacaaatgcataCATCCCAATCCAcaggaaaacaaaaatgaaacaaaacaaacagtaaacagaacaaaaatgaaacaaaacaaagaaaaaacatataagGTTAtaattgaaagaaaaataagagaaagatACATAACAACTTCAAAACACACATCAGCGGCCTGCATCATCCCTGTCCACTCAAAATGACACACCTCTATCCACTGGCAGTCTTCTGCATTTGcttgctgtttgtttgtgtgtgtgtttttttctcatcaCCCACAGCAGAGAAAAGTCCAGCACTAATTACTGCCAGACtcatatttacagttttacatcCCCCTCCCCAAACCTCGAACCCCGCCCTCTGTGTGTCCTAACACCGTATATTCCCTAATATTGCagtaacatttttaaaggaATTTCTCCAAACCCATAAGTTTAGATTTGAAATTAATTCGTATGGAGCATCATAGTAAATAGATTGTCAAACTAAATTAGATTTCAGCAATAAAACCAGCATGAATACTGACACCTAGAGAACAGTGAGAGTTTCACTCATCGTTAAAGAAATAGTCGCAGAAATAGTTGCGCTCAGAAGGAAGTGACTGATTGCAATGCCATCGAGCGTTGATAGCACGTCCAATAGCATCCAACACATTTTTATTCTGGTAATGCAGCTGGTCATGGCATAACATCTGTCTTCAGTGCAAGCTTTTAAGACAGCAGCAATAtatggacaagcattgtcctatTAAAACAGAGCACTGGCGTGTAcgttcagaaaaggtagggccGGCtaagagtggtccagcggggaGATCGcctgttcgaatcctgttcatgtagcttgccatcagctgccagagccctgagggagcacaattcacctttgctctctctctctgggtgggtagatggcactctcttcccacatcactacaaagggtgatgtcctcAGCACTaggtatctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccgagcgctgGTGTttactgacttcacatgtactggaggaggcatgtgctactcttcaccctcctggtgttggggcatcactagtgatagggggagtcctaatgagtaaaTTAGaggtagggccactggttgcaggacctcattaacggAACACTGGGCTGTCAAAAGAGTAGTCTGCATTTAAGTCCAAAAGATAATGTGGAATTGTACGAAATTGCACCAAAAAAGCATGACACGAGGCCTTCTAGACATGACGTGATGTGTAACCACAAGTTGTTCATCATggtgcctccacacacagattTGTTGGTCATTTTCACAGTCAAGGGAAACTCATTGGACTCGTCACTGAATATTACTCACTCCATGACTGGCATGTCTGGCACAGcgacccaccaagtttcattcctgtaggttgattccttctgggtgcaactataaattttttttacgatgagtgtatataaatataatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98894 lncRNA downstream 411256 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA downstream 411256 13416657 ~ 13417462 (-) True G73322
TU98871 lncRNA downstream 590404 13237953 ~ 13238314 (-) True G73302
TU98850 lncRNA downstream 740282 12989186 ~ 13088436 (-) True G73281
TU98799 lncRNA downstream 967090 12861113 ~ 12861628 (-) True G73238
TU99027 lncRNA upstream 175995 14006752 ~ 14007149 (-) True G73429
TU99030 lncRNA upstream 207312 14038069 ~ 14038368 (-) True G73432
TU99032 lncRNA upstream 239742 14070499 ~ 14072038 (-) True G73434
TU99102 lncRNA upstream 445922 14276679 ~ 14277106 (-) True G73491
TU99124 lncRNA upstream 636865 14467622 ~ 14468141 (-) True G73509
XM_007228148.3 mRNA downstream 879279 12944453 ~ 12949439 (-) True rag2
XM_007228136.3 mRNA downstream 957336 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA downstream 1062903 12722277 ~ 12765815 (-) False LOC103043208
XM_007228127.3 mRNA downstream 1154196 12662741 ~ 12674522 (-) True unc45a
XM_007228300.3 mRNA downstream 1166911 12658893 ~ 12661807 (-) True gdpgp1
XM_022671890.1 mRNA upstream 2796 13833553 ~ 13848142 (-) True LOC103022766
XM_007228155.3 mRNA upstream 30793 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA upstream 30793 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA upstream 30793 13861550 ~ 13883555 (-) False slc1a2
XM_022672165.1 mRNA upstream 89416 13920173 ~ 13964026 (-) False pamr1
TU98709 other downstream 1207362 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1263752 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1263844 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1263920 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2052579 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 711452 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1931007 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 4046269 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 4151990 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 5108417 18939174 ~ 18940464 (-) True G74791

Expression Profile