RNA id: TU99010


Basic Information

Item Value
RNA id TU99010
length 997
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G73414
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14163344 ~ 14164340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttatatttataagaaaaatcatgaaaattatcagggaaGCCCAAACCAGAATTTCAGCTGCAGCTCATTTACTGTTACATGTTTATGAGCCTCAACTTTAACTGTGTAGAAGCAGGAATAAAGATGTGTATTAGGAGAACTTGTGATCTGAACTatgttgagttaactcaaacaCTAAATAATAACTCTGTTATTAGTTACTTTATCATTTTCGaatcttacatttttacagtgtgtgtatttggGCTGCAACCTAATAGtaactcatttaaagcaaataaactCAAACACATCATGCTACAACTTTTCAacacagattatatctgcctAATATCAGTCATTTTACACCAGACTGTACCTATATCATTACATGCATCATTGCATTATTACTGACTTATGGTGACTTATGTTGGATTttggtgatgtttttttgttttaatatcacaatCAATCATAGCTCAACACatatataatttgtttttttaatatggtgCAGCCCTGGTATCTACAGTGCAGTGGTTCAAATGGATTGATGAATTGTGTTAATTAAggcgttattttattttattttatttttttgcactgtgcACGGACAGTTGCTCAGACTTTTAAATGATCCTCTTGTGGAAGAAGTGTTTCCACGAGGCCGTCTATTTTTGAATGACTCATTTACATACAGAAATGTAGCTCTAGTTTCAGCGATGCTGAACATCTATCTGCTGTTTACTTCTCTGTTATCTGCCTTTTGGCAGTGCTTTAAAGAGCTTTTCTAGGCAAGGAATGTCTAGCCTTTCATCATGAGTGCTGTTTTTGGATTATGCGATTAATGAAAAATGTCACAAATGTCTGTTCTTCTGGAGGAACTTTGGAAAAGCTTGAGAAAgttgtatttttaaacatttctggcCTCTGCTGTTATTTCGCAGACATGGTGACACCACTGTAATACAAAAGTGCAACTCACAGCTGACAATAAAGTGACATcctcacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99012 lncRNA upstream 124 14162827 ~ 14163220 (+) True G73415
TU99021 lncRNA upstream 92960 14070044 ~ 14070384 (+) True G73423
TU99020 lncRNA upstream 94550 14068583 ~ 14068794 (+) True G73422
TU99016 lncRNA upstream 156209 14006822 ~ 14007135 (+) True G73419
TU99014 lncRNA upstream 158120 14004653 ~ 14005224 (+) True G73417
TU99043 lncRNA downstream 454 14164794 ~ 14165656 (+) True G73443
TU99066 lncRNA downstream 102436 14266776 ~ 14269724 (+) False G73464
TU99067 lncRNA downstream 102436 14266776 ~ 14268915 (+) True G73464
TU99068 lncRNA downstream 102436 14266776 ~ 14268356 (+) False G73464
TU99072 lncRNA downstream 159625 14323965 ~ 14324623 (+) True G73468
XM_022672166.1 mRNA upstream 2045 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 151624 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 334922 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 398294 13694428 ~ 13765050 (+) True pdhx
XM_022672163.1 mRNA upstream 486503 13669622 ~ 13676841 (+) False ehf
XM_022672167.1 mRNA downstream 73699 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 382457 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 391680 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 391680 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 426263 14590603 ~ 14595936 (+) True LOC103026417
XR_002650241.1 other upstream 1265413 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1559920 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4081204 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5013925 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7277803 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 484489 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 727194 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2122336 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4290511 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4918476 19082816 ~ 19085556 (+) True G74832

Expression Profile