RNA id: TU99014


Basic Information

Item Value
RNA id TU99014
length 395
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G73417
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14004653 ~ 14005224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cATACCTGtcaaattttagattaaaaaataagggatattttcctctgtccgcttaaagttgtcccaccagcccaacgtaggttcagtatcccttacattttaagacaggtttacaaaaaaaatctaaaataacgacatgtgaaccacttacacacaattagattatcagaatctgaaattctgcaaactgaatcttttgatcactccacccctgatcaggggtgggtttcccgaaagcttcgtaacgctaagaacttcgttaactcgtacttaagattgatcgttaattaaagagtgtttcccaaaccggtgcgtaactaaagtactacgtaaactcgctcgcagattaacgagtgccctgACCCACTCGTTATTCTtaagagcttctttagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99013 lncRNA upstream 1227 14003072 ~ 14003426 (+) True G73416
TU98991 lncRNA upstream 81357 13922601 ~ 13923296 (+) True G73404
TU98944 lncRNA upstream 173888 13828719 ~ 13830765 (+) True G73359
TU98947 lncRNA upstream 210495 13791330 ~ 13794158 (+) True G73361
TU98939 lncRNA upstream 236293 13768125 ~ 13768360 (+) True G73354
TU99016 lncRNA downstream 1598 14006822 ~ 14007135 (+) True G73419
TU99020 lncRNA downstream 63359 14068583 ~ 14068794 (+) True G73422
TU99021 lncRNA downstream 64820 14070044 ~ 14070384 (+) True G73423
TU99012 lncRNA downstream 157603 14162827 ~ 14163220 (+) True G73415
TU99010 lncRNA downstream 158120 14163344 ~ 14164340 (+) True G73414
XM_022671916.1 mRNA upstream 176231 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 239603 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 327577 13669622 ~ 13677076 (+) True ehf
XM_007228150.3 mRNA upstream 327812 13662809 ~ 13676841 (+) False ehf
XM_007228159.3 mRNA downstream 3408 14008632 ~ 14011720 (+) True fjx1
XM_022672166.1 mRNA downstream 72788 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 232815 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 541573 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 550796 14556020 ~ 14562537 (+) True LOC103025904
XR_002650241.1 other upstream 1106722 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1401229 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3922513 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4855234 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7119112 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 643605 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 886310 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2281452 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4449627 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5077592 19082816 ~ 19085556 (+) True G74832

Expression Profile