RNA id: TU99021


Basic Information

Item Value
RNA id TU99021
length 341
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G73423
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14070044 ~ 14070384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccagcaccagcagtgcctgccgcccacgtggtacccactgctccagaccctgtgcccgcggctccggccgcctctgaccctgtgcccgcggctccggccgcctctgaccctgtgcccgcggctccggccgcctctgaccctgtgcccgcggctccggccgcctctgaccctgtgacCATGGTTTCCACTACCTCCCCTGTTCCTGTGCCCACTCCCAGAACTATTTATACTCCCCATTCACGCATTCCTAGGCCAGCCCCAAGACCTCCGGAATTCACccccagaactgtgcccagACTGGCCTCACAGACAGTATCACAGACTTGTGCCAGTCCTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99020 lncRNA upstream 1250 14068583 ~ 14068794 (+) True G73422
TU99016 lncRNA upstream 62909 14006822 ~ 14007135 (+) True G73419
TU99014 lncRNA upstream 64820 14004653 ~ 14005224 (+) True G73417
TU99013 lncRNA upstream 66618 14003072 ~ 14003426 (+) True G73416
TU98991 lncRNA upstream 146748 13922601 ~ 13923296 (+) True G73404
TU99012 lncRNA downstream 92443 14162827 ~ 14163220 (+) True G73415
TU99010 lncRNA downstream 92960 14163344 ~ 14164340 (+) True G73414
TU99043 lncRNA downstream 94410 14164794 ~ 14165656 (+) True G73443
TU99066 lncRNA downstream 196392 14266776 ~ 14269724 (+) False G73464
TU99067 lncRNA downstream 196392 14266776 ~ 14268915 (+) True G73464
XM_007228159.3 mRNA upstream 58324 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 241622 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 304994 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 392968 13669622 ~ 13677076 (+) True ehf
XM_022672166.1 mRNA downstream 7628 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 167655 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 476413 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 485636 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 485636 14556020 ~ 14562537 (+) False LOC103025904
XR_002650241.1 other upstream 1172113 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1466620 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3987904 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4920625 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7184503 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 578445 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 821150 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2216292 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4384467 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5012432 19082816 ~ 19085556 (+) True G74832

Expression Profile