RNA id: TU99032


Basic Information

Item Value
RNA id TU99032
length 960
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G73434
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14070499 ~ 14072038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TatgactaaacaaacaaaacactgaataactaGAACACTAgggacacaaaataaaataggtaCACTTACTGaattaacaaaacaacagacctgGATTCAGGGAACATAAatgcacaaaatacaaaacttggATATACAGACAGcaaagatacaaaagactccacaaggCAACACTCATACAAGaggctatttatacacaaggagggtgaagacaggtaatgagggggcggggttacaaacaagacacaaggtgacaacactaatggctaggggctgggctagggcggggctagggtggagacagaacaataacaaaacaatgccatgtgctcaaaaaagcacatggctggaaacacaagacaggaaaacagggcaggagcacagaaaaccaaaagagggaaaaacacaggacagacaggctaatatgtgacattaccccccctcaacggcgccactaccagaggcgccgagagagagggaacagaaaaacaaaagacaggGCTAGACAAGACCTGGGGACGAACACAGGGGCTGGAACAGAGTCAGGAAACTAGACAGGGGGTACTAATTTGGActggaacggagactggacaggtggtagaaacagagactggacaggggatgagaacagagactggacagagggctgtacATTGGACAAGGatacagactggacaggggatgagaacagagactggacagagggctgtacATTGGACAAGGatacagactggacaggggatgagaacagagactggacaggggagtACATACTGGGACTGGAATGGAGACTGGGGAGGTGGGaaaaacagagactggacaggggacgagaactgagactggacagagggctgtacATTGGGCAGGGATGCAGACAGGGCAGGGGACatgaacaaagactggacaggggacggagactggacgaaagactggacagggggctgagactggacaggggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99030 lncRNA downstream 32131 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 63350 14006752 ~ 14007149 (-) True G73429
TU98957 lncRNA downstream 239742 13828718 ~ 13830757 (-) True G73371
TU98894 lncRNA downstream 653037 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA downstream 653037 13416657 ~ 13417462 (-) True G73322
TU99102 lncRNA upstream 204641 14276679 ~ 14277106 (-) True G73491
TU99124 lncRNA upstream 395584 14467622 ~ 14468141 (-) True G73509
TU99167 lncRNA upstream 525913 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 526416 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 603843 14675881 ~ 14676858 (-) True G73606
XM_022672165.1 mRNA downstream 106473 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA downstream 106473 13920173 ~ 13964026 (-) True pamr1
XM_007228155.3 mRNA downstream 160896 13861550 ~ 13909603 (-) True slc1a2
XM_022672168.1 mRNA upstream 318647 14390685 ~ 14460388 (-) True LOC103024229
XM_007228165.2 mRNA upstream 470158 14542196 ~ 14545536 (-) True LOC103025073
XM_007228164.3 mRNA upstream 478834 14550872 ~ 14554955 (-) True cib1
XM_022672170.1 mRNA upstream 494872 14566910 ~ 14574221 (-) True LOC103040849
XM_007228304.2 mRNA upstream 502757 14574795 ~ 14578518 (-) True LOC103041151
TU98709 other downstream 1449143 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1505533 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1505625 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1505701 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2294360 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 470171 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1689726 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3804988 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3910709 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4867136 18939174 ~ 18940464 (-) True G74791

Expression Profile