RNA id: TU99067


Basic Information

Item Value
RNA id TU99067
length 462
lncRNA type intronic
GC content 0.70
exon number 3
gene id G73464
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14266776 ~ 14269724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cggaggctgagtatatatgcctgtctcaactggcggctcaatcagccctcatgcgggccagctgagacaggcatggctttgcgctctggcgtggggcggacccacaactcccccgcctcctcacgccacagtccCTCCCCCTAAGCTTCCAGCCACCAGGGTCGAAGGTGAGGCGTGACCTGGTGACTGGAGCGAACGAAGAGAGGCGGGGTGAGGAGAGCGGGGGATGCAGTTCGTTCGCTTGGgcggctgctctcggcaccgggacaggtggagcggctgctctcggcaccgggacaggtggagcggcggctcgtggcACCGGGGCTGGCTGAGCGGCTGCTCCCgatagcgccggggcttgcggagcggcggctctcggtagcgccggggcggctctcggtagcgccggggcattcggagcggcggctctcggtagcgccggggcttgtggagcggcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99043 lncRNA upstream 101120 14164794 ~ 14165656 (+) True G73443
TU99010 lncRNA upstream 102436 14163344 ~ 14164340 (+) True G73414
TU99012 lncRNA upstream 103556 14162827 ~ 14163220 (+) True G73415
TU99021 lncRNA upstream 196392 14070044 ~ 14070384 (+) True G73423
TU99020 lncRNA upstream 197982 14068583 ~ 14068794 (+) True G73422
TU99072 lncRNA downstream 55050 14323965 ~ 14324623 (+) True G73468
TU99136 lncRNA downstream 273283 14542198 ~ 14545513 (+) True G73514
TU99154 lncRNA downstream 345503 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 369032 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 377528 14646443 ~ 14647562 (+) True G73532
XM_022672166.1 mRNA upstream 105477 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 255056 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 438354 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 501726 13694428 ~ 13765050 (+) True pdhx
XM_022672163.1 mRNA upstream 589935 13669622 ~ 13676841 (+) False ehf
XM_022672169.1 mRNA downstream 277882 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 287105 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 287105 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 321688 14590603 ~ 14595936 (+) True LOC103026417
XM_007228171.3 mRNA downstream 329050 14597965 ~ 14605957 (+) False slc25a3
XR_002650241.1 other upstream 1368845 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1663352 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4184636 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5117357 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7381235 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 379914 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 622619 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2017761 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4185936 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4813901 19082816 ~ 19085556 (+) True G74832

Expression Profile