RNA id: TU99136


Basic Information

Item Value
RNA id TU99136
length 627
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G73514
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14542198 ~ 14545513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTCTCATgagatttattaaattaaaatgcattttctataGGAAAACATAAGGCAAATACAAGTGTGTGACTGACAGGAACGTGACAGTTCAATTCAAGAGGCAAAAGACATGGAAAAAAGGCAACTCAAAAGACAGATGACAAATGTAAGATGTGTATggaatgtgcaaagctggtacaGTCCCAGAATACTATTCACTCGGGTTCTGAATGACGATCAGTAGGTATTCTTTATCAGGTGCAACCATGATCTCATGCTTCTTGGATCTGATGCGTAGGAATGTCAAGTCATTCTGAGGGTCTATGTCCCTGACTGTGCTCCTGGCTTTCATAGTAAGCTGATGAAGCAGTCCAGCGTACTGTACTGTGGTGGAATTGTCCAGGGTTGTTCTAATGGGAATACCTTCAGCATTTACTACTATTGTCCCTATGACCCCTTTGTGGGTCTGGATTCTCTTCAGTGTGTCTTCTACTTCAGCCATAGCTCCTCCGCTCTGTTTCCTCCGTTGCTGTTTCTCTGATGTGCTTTCCGTTGCTATGTGGAGACGGAAGTGTGAAGCCAGTAGTAGTGTAGAAAGATTTACCACAGCTGGTTTATGGAGAGACTGCCCACTTTTTAAATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99072 lncRNA upstream 217575 14323965 ~ 14324623 (+) True G73468
TU99066 lncRNA upstream 272474 14266776 ~ 14269724 (+) False G73464
TU99067 lncRNA upstream 273283 14266776 ~ 14268915 (+) True G73464
TU99068 lncRNA upstream 273842 14266776 ~ 14268356 (+) False G73464
TU99043 lncRNA upstream 376542 14164794 ~ 14165656 (+) True G73443
TU99154 lncRNA downstream 68905 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 92434 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 100930 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 130360 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 298932 14844445 ~ 14844664 (+) True G73598
XM_022672167.1 mRNA upstream 152877 14238039 ~ 14389321 (+) True ldlrad3
XM_022672166.1 mRNA upstream 380899 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 530478 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 713776 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 777148 13694428 ~ 13765050 (+) True pdhx
XM_022672169.1 mRNA downstream 1284 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 10507 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 10507 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 45090 14590603 ~ 14595936 (+) True LOC103026417
XM_007228171.3 mRNA downstream 52452 14597965 ~ 14605957 (+) False slc25a3
XR_002650241.1 other upstream 1644267 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1938774 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4460058 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5392779 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7656657 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 103316 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 346021 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1741163 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3909338 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4537303 19082816 ~ 19085556 (+) True G74832

Expression Profile