RNA id: TU99158


Basic Information

Item Value
RNA id TU99158
length 1120
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G73532
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14646443 ~ 14647562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCTCTCCAGAGCTCTgtctttcctcagtctccgtcGTCTGTGGTTGGCCCAGAAGACTCTGGGTGGAGTCCAAGTCGACCATCAAACCCAAGCATGGCTTTTCAAGGAAGTGTTTCGCACCCTGTAATCCTTATAATCCACCAAGCCTGGAGCTTCAGAAGCAGTCCTCTATTAATTTCACAAACTTAAGGTCAGCCAGATTCCACTTAcccatctctgtctctctgtgttagTTTAGCTTGCTGTAGACTGGAGGGAAGATGGGCAGATGGACTGCTTGTACTGCTAGAACTGTCCGCTTGTCCATCTAAACCTACTTTTGTGCCACTTCAATAAAAGTTGTTGAGTCAGAGAATTAaaccaggaaaaaaaatctgatgaaATCAgataattttaccaaaaaatttGCTGAGGAAATTTGTGCAATTCAGagtaaattactttttacaatTTAGCAAAATTAACAAAACTTCTACCCACCATTAAAGAAAGCCTCAGATGCAACTCACAACACAGTAGGTATTTAAACAGGTCTGCTCCATCTCAAGGTGCCTTTTTCTGTGGGCTGCATTGTATTCCCATAATTAAGATTTTATGGAGCAACCTCAGCGATAAATACTTATTGATTTGCTGATGTTGATTTACATAAGCCTCCACCACACCAGCAGCGAAGCAAGGTCGCAGATCTGGAGAGGTCAGCAGTCGTGAGAGTGTGCAGAGGTCACTTCCAAGAGCCCTTGTTAACAGTGTCCATTCGAGCCTGGTTTTAGCATCACTGCTGGTGAAGTGTGAAGTGTAATCCGTGGCACTCTACTGGATTAAAAATGAGGTTGTTGTAGTCATTTGTGAATCCATTCTTCTTGTGCGTGAAAACAGTTCACATGTTCCAGTGTAACGGGTTGTTGATTCTGTAGCTTTAGGTACTTGACCTATTCAGGTAAAAGGTAATCGAGAAGTTCTTTAGTTGCTGGTCCTGGTTTGGCAAGTGTCCAATGAGGGATTGGACCAGAGCTTGCATGAACAGTACCGTGCCTCAAAAGCCCAGTCTCCTTCAGATCCATTCCTCCAGCACCCtagcagagacagagagaagaaagagcagAAGAGCCTAGATGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99150 lncRNA upstream 7890 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 27119 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 100930 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 321820 14323965 ~ 14324623 (+) True G73468
TU99067 lncRNA upstream 377528 14266776 ~ 14268915 (+) True G73464
TU99198 lncRNA downstream 28311 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 196883 14844445 ~ 14844664 (+) True G73598
TU99411 lncRNA downstream 476310 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 538687 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 541333 15188895 ~ 15189386 (+) True G73715
XM_022672172.1 mRNA upstream 9370 14627212 ~ 14637073 (+) False LOC103027493
XM_007228173.3 mRNA upstream 9370 14627214 ~ 14637073 (+) True LOC103027493
XM_007228174.3 mRNA upstream 20372 14620471 ~ 14626071 (+) True slc35b4
XM_007228177.3 mRNA upstream 32053 14607589 ~ 14614390 (+) True LOC103028647
XM_007228185.3 mRNA downstream 97706 14745268 ~ 14754530 (+) True dus2
XM_007228183.3 mRNA downstream 109761 14757323 ~ 14775204 (+) True LOC103030248
XM_007228184.3 mRNA downstream 109761 14757323 ~ 14775204 (+) False LOC103030248
XM_007228191.3 mRNA downstream 129149 14776711 ~ 14786908 (+) True amfr
XM_007228188.3 mRNA downstream 141205 14788767 ~ 14797233 (+) True LOC103031607
XR_002650241.1 other upstream 1748512 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2043019 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4564303 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5497024 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7760902 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 1267 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 243972 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1639114 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3807289 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4435254 19082816 ~ 19085556 (+) True G74832

Expression Profile