RNA id: TU99163


Basic Information

Item Value
RNA id TU99163
length 541
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC103025073
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14542196 ~ 14545536 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCGTCTCCACATAGCAACGGAAAGCACATCAGAGAAACAGCAACGGAGGAAACAGAGCGGAGGAGCTATGGCTGAAGTAGAAGACACACTGAAGAGAATCCAGACCCACAAAGGGGTCATAGGGACAATAGTAGTAAATGCTGAAGGTATTCCCATTAGAACAACCCTGGACAATTCCACCACAGTACAGTACGCTGGACTGCTTCATCAGCTTACTATGAAAGCCAGGAGCACAGTCAGGGACATAGACCCTCAGAATGACTTGACATTCCTACGCATCAGATCCAAGAAGCATGAGATCATGGTTGCACCTGATAAAGAATACCTACTGATCGTCATTCAGAACCCGAGTGAATAGTATTCTGGGACtgtaccagctttgcacattccATACACATCTTACATTTGTCATCTGTCTTTTGAGTTGCCTTTTTTCCATGTCTTTTGCCTCTTGAATTGAACTGTCACGTTCCTGTCAGTCACACACTTGTATTTGCCTTATGTTTTCCtatagaaaatgcattttaatttaataaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99124 lncRNA downstream 74068 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 265103 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 470171 14070499 ~ 14072038 (-) True G73434
TU99030 lncRNA downstream 503841 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 535060 14006752 ~ 14007149 (-) True G73429
TU99167 lncRNA upstream 52513 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 53016 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 130443 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 163623 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 199732 14745170 ~ 14748658 (-) True G73617
XM_022672168.1 mRNA downstream 81821 14390685 ~ 14460388 (-) True LOC103024229
XM_022672165.1 mRNA downstream 578183 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA downstream 578183 13920173 ~ 13964026 (-) True pamr1
XM_007228155.3 mRNA downstream 632606 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA downstream 658644 13861550 ~ 13883565 (-) False slc1a2
XM_007228164.3 mRNA upstream 5434 14550872 ~ 14554955 (-) True cib1
XM_022672170.1 mRNA upstream 21472 14566910 ~ 14574221 (-) True LOC103040849
XM_007228304.2 mRNA upstream 29357 14574795 ~ 14578518 (-) True LOC103041151
XM_007228175.2 mRNA upstream 68953 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA upstream 68953 14614391 ~ 14619171 (-) True LOC103028140
TU98709 other downstream 1920853 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1977243 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1977335 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1977411 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2766070 11767509 ~ 11776139 (-) True LOC111193095
XR_002650248.1 other upstream 1216326 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3331588 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3437309 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4393736 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4525500 19070938 ~ 19072888 (-) True G74838

Expression Profile