RNA id: TU99239


Basic Information

Item Value
RNA id TU99239
length 220
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G73598
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14844445 ~ 14844664 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatggctgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaatcaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttaatcacagttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcctggtgcaaacattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99198 lncRNA upstream 167651 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 196883 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 205892 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 225121 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 298932 14542198 ~ 14545513 (+) True G73514
TU99411 lncRNA downstream 279208 15123872 ~ 15126987 (+) True G73710
XR_002650246.1 lncRNA downstream 341585 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 344231 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 344231 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA downstream 344231 15188895 ~ 15189386 (+) False G73715
XM_007228193.3 mRNA upstream 21111 14814804 ~ 14823334 (+) True hsd17b2
XM_007228187.3 mRNA upstream 31947 14801718 ~ 14812498 (+) True LOC103031298
XM_007228188.3 mRNA upstream 47212 14788767 ~ 14797233 (+) True LOC103031607
XM_007228189.3 mRNA upstream 47212 14788767 ~ 14797233 (+) False LOC103031607
XM_007228190.3 mRNA upstream 47212 14788767 ~ 14797233 (+) False LOC103031607
XM_007228198.3 mRNA downstream 46870 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA downstream 46870 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA downstream 47229 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228203.3 mRNA downstream 230795 15075459 ~ 15081023 (+) True irx5
XM_022672185.1 mRNA downstream 463865 15308529 ~ 15351344 (+) True lrrk2
TU99159 other upstream 194894 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 1946514 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2241021 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4762305 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5695026 9142899 ~ 9149419 (+) True G72281
XR_002650242.1 other downstream 46870 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1442012 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3610187 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4238152 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4683327 19527991 ~ 19533073 (+) False LOC103044129

Expression Profile