RNA id: XM_007228179.3


Basic Information

Item Value
RNA id XM_007228179.3
length 3113
RNA type mRNA
GC content 0.42
exon number 10
gene id hbp1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14709058 ~ 14797283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcattggtacatttacacatatttatttttctcatgGATTGTCATTGCTCAGAGTACAAGGAAGTTaaataacaattttaataaatagcatAACGAGTAATAAATAGATCAAATCTAAGAAAATAAGGTATGTAAGTGGCAGTTATAAGTATTTACAGATACAGATCTGAACATGTTTTGGCTTTTTGACAATAATGTGAACAATAGATTTATCCTGAATTATACCTTCTCTTTTATCTGTGCTCATCTGTCTTTTTACTTTCAAATCAAATACTTTTCCATGGATAAATGgagtaatattaaaattattttttttgttttgtttgatttgcTAACTTAAGATaactaacttaaaataaatatatcaaagCTAAGGGTACGACATTGAGATATACGTTATGAACAAAATGTATCATACAATTTATTGTTTACTAATTTTCCTCTGTTTAAAGCCTGTTCAGGTGATATGGCATAGTATGGTGTGGGAAGTGAAGACTCAGTCAGTGCCCCAAAGAGTCCAGAAACCCCAGACAGACTGCTCAGGCATGGACGAAGCCTTTGACTTGCTCAAATGTAATGAGGACCTGCCCTCGTCGCCAGGTTGCCCCTCCAGTGACAGCCACATGGAATATGATGATCTCccagagctgcaggaggtgCAGGATGATCAGTCATCCACAGAGGTGTTCCAGGTAACTCCAGATGTGTCACATGAGGAAAGGCCTGGGCACAGCAGGAACCTGCAGTTAGAGAGCAGCTCCTCACACACCAACTGGCTGACAGAGTTAGCCAATATTGCCACCAGCCCCCAAAGTCCCTTGCTGCAGAATGTGCCTCACACCCGCTCCTCTCCTGTGCACATCTTTGCCGGCAGTAACAGTTTACATTCCTACGCTAGGCCTCCTTTGGCCTCCAGCAGTGCTCCCAGCCCTGCTCGCAGCCACATGAGAGAGCGTCGCCGCGTGCGGGCCAGCAGTGAGTCTGAATCGGGGATATTCTGCATGTCCTCATTGTCAGATGATGACGACATGGGCTGGTCCCATTCTGGGCCTTCCACTGTCTGGCACTGCTTTTTGAAAGGCACACGCCTGCGCTTCCACAAAGGGCAAAATGTGGAGTGGCAGGATGTAGAGGACCTGGCTGAGTCAGAGGATGAGTCTGATGATGAAGGAGGCATGCACTTCAGTCCTATTAAGAGTTATGGATCCGAAGGCTTGAAACTTGTGGCCCTGGAGGAGACTGTGTCTTTTGGTCAGTCTGTTTTGCAACTAACCTTTGACCCTGGCTCTTCAGAGACTGGCCTTCTAACTGCTGAGTGCCAATTGGACCATCCATTCTATGTGAAAAGTAAAGGATGGTCCTCTTTTTATCCGAGCCTTACTGTGGTGCAGCATGGCATCCCCTGTTATGAAATGCAGGTTGGGGATTTGTGTCTGCCGCCGGGACACCGTGATGCCATCAACTGTGATGACTCAACTGTTTTTGACACCTTCAGGAGTTACGACTTTACCCCTCTGGACTCATCTGCTGTGTATGTGCTGAGCAGTATGGCACGTCAGAGAAGAGCCTCACAGTCCAGCGGAGGTACGGTGAGCCCTGACTGTGAGAAACTTGAACGATCTGGCTCCTCCCACCACTCCTCCAGTAGCAAATCACGCAGCCACTCCTCAGGCGGCGGTGGAGCCACACCCACAAAATGCAAGCGGCCAATGAACGCCTTCATGCTCTTTGCCAAGAAGTATAGAGTGGAGTACACGCAGATGTATCCTGGAAAGGACAACAGAGCCATTAGTGTGATTCTGGGCGACAAGTGGAAGAAGATGAAGAACGAGGAGAGGAAGATGTACACAATGGAGGCTAAAGCATTGGCTGAGGAACAGAAGCGCCTCAACCCAGACTGCTGGAAGCGCAAGAGGACTAACTCGGGCTCGCAGCAGAACTAGCCTGAGGAATGCGGGAGACACATGAACTGGACAGAGAGACTGACGCCACCTATCCCGCCTTCTTCTGTAAAAGCGATGAGGCTTAAATGTGATGCTAAACACACTcgctaataataaaataaataaatcaataaatacaaacaggtATACAActtcaagtaaaataaaaaaacaagacaaataagatatataaactatataaaaccaTATAATCTAGTAAACTAACAGTGCTTATATATTtcttatctttttaaaatgtatggaAATGCCTTATTCTTCCAAAGTAAGACAACGCTCAGTTCTTCTTTCAGGTAATTTCATATTTCTAGGCTTGAAAGCTGAGACCCTGTGGTGCTATTTTAGTGAGGGCGAAGGAgcagtatatataaaaaaaacaaaagtctatttttaaatgtaaaaagggGAATTTtagatgttagctagcttgttttcagctgttcatattaattatatttgtatAACTCAATATTGCACAGACTTGATGTATTGCAAATGGACGAAAACTGTTGAATTTCATATTCGTCAGTGATCTGGGAAGGGTTGTATTCTGTAGACACCTATCCAGCCTAGACCATatactgtgtgtgcatgttatGTATGCGAGTGAGTGAgcacatgagtgtgtgtgtgtgttttttgtgagtCAGAGTTTGAGAGAGCGTGCGAGCGTGGATGATTGTGCACCATCCAGCCGGCCATATTACAGTGTATATCAGGCTTCtacataaacatacacatacttacacacacacttgaatACCTACAGACACTCACATAaacatatagacacacacagacacatcctctctcacacacagcacttCAGGGCCATGCCTTCACTgtaagtgtttttgtttttgcactttatatacatacataaccTTATACAACCAGTAAATGTATACAAGCTGAACATTTGTGTATAAAATTCTATATATCTTGCTAAGATATATTCTCATGACACAATCATGGCCAAACTATATTGCTTTGCAGGGTTGCCattacattgaaaaaaaaattttaaagaaaaaaaaaaaaaagaagtaaaccATTGTTGATAATGTACAGGTTCACGTTCCCATCCAGTTCTTGCACAAAACTATTCTTGTatcatattataaataaaattttaaacttGCTCTCTGGTAA

Function

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99251 lncRNA downstream 32200 14675881 ~ 14676858 (-) True G73606
TU99167 lncRNA downstream 103098 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA downstream 103098 14598454 ~ 14605960 (-) True G73540
TU99124 lncRNA downstream 240917 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 431952 14276679 ~ 14277106 (-) True G73491
TU99266 lncRNA upstream 29610 14745170 ~ 14748658 (-) True G73617
TU99272 lncRNA upstream 41339 14756899 ~ 14757248 (-) True G73622
TU99250 lncRNA upstream 81795 14797355 ~ 14800633 (-) True G73605
TU99301 lncRNA upstream 88671 14804231 ~ 14805502 (-) True G73639
TU99307 lncRNA upstream 102942 14818502 ~ 14818812 (-) True G73642
XM_022671917.1 mRNA downstream 18951 14687689 ~ 14690107 (-) True LOC111193055
XM_007228172.3 mRNA downstream 59807 14640001 ~ 14649251 (-) True gpr22
XM_007228175.2 mRNA downstream 89670 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA downstream 89887 14614391 ~ 14619171 (-) True LOC103028140
XM_007228304.2 mRNA downstream 130540 14574795 ~ 14578518 (-) True LOC103041151
XM_007228182.3 mRNA upstream 2994 14718554 ~ 14733253 (-) True prkar2b
XM_007228192.3 mRNA upstream 107658 14823218 ~ 14826889 (-) True mphosph6
XM_007228194.3 mRNA upstream 111844 14827404 ~ 14831477 (-) True snx20
XM_022672176.1 mRNA upstream 134022 14849582 ~ 14857596 (-) False LOC103033621
XM_007228195.3 mRNA upstream 134022 14849582 ~ 14857595 (-) True LOC103033621
TU99163 other downstream 163620 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2087702 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2144092 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2144184 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2144260 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1046204 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3161466 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3267187 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4223614 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4355378 19070938 ~ 19072888 (-) True G74838

Expression Profile