RNA id: TU99350



Basic Information


Item Value
RNA id TU99350
length 773
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G73671
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14891472 ~ 14893864 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCCGCTGAGACAGCGGAGGTGTGTCTTGCCTAAGTCTGCGGAGGCCGGAATTAATGCGAGATTGAACGTGACTATAGGGCGTTGGTCTGTGACTCTGGGTCTGAAGTTGATGTTTTGCTATGAGCAGACGTTGCTTGAGCCCCTCATTTTGCTTCTCCAGTTCCTGGACCTTCTCTTGGAGCTCCTCCATCATTTCTTCCATCTCAACATCCCGACCACCTACCGCACGACCTGCTGAAGTCATCTGCTCTACCCTCTTACGGTCCTTTACCAAGCGGATCAGCTTGGTGGCCATTCTCTTGATCTTGTCCTcttgtttgtgcgtgtgttgtTTGAGCAGGAGGTTTTCATCCTGCAAACGGAGATAGCGGTCTTCAAGCTCCTCTCTGCTGACCTTGGCCACAGCTTGTCTGGCTCGGGCATTATGGGATTCTAGCATGCCTGCTCCACTGGGGTTTAAAGGTTGGTCTCTCACAGGAACTTCCTCAGGACTCTCGTCAAGTAACGAGATCGCCGACATGCTTcaattgtaaatatactttctcAGTTCGCCAGATTTTGAGCTAGCTTAGCGTGCTACATTATCGGGAGCCGCAGCGACCGTTGCTAGCAAACAACTCGCAGCTTCCCCAGCTACTGGACGACTTCCCGAAAACcattctgggaaatgtagttccAGCAGGTTTACGGGGAGTCTGTCCAGACAAGTCCCGTCTCCCCAGTTATCTGCTCTAGAGACGCTGGAGGGAGCCCGCGAGAATCCACAGTGAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU99309 lncRNA downstream 70996 14820230 ~ 14820476 (-) True G73644
TU99308 lncRNA downstream 71709 14819476 ~ 14819763 (-) True G73643
TU99307 lncRNA downstream 72660 14818502 ~ 14818812 (-) True G73642
TU99301 lncRNA downstream 85970 14804231 ~ 14805502 (-) True G73639
TU99250 lncRNA downstream 90839 14797355 ~ 14800633 (-) True G73605
TU99357 lncRNA upstream 6804 14900668 ~ 14901465 (-) False G73674
TU99358 lncRNA upstream 6804 14900668 ~ 14902293 (-) True G73674
TU99359 lncRNA upstream 8524 14902388 ~ 14904820 (-) True G73675
TU99364 lncRNA upstream 15243 14909107 ~ 14910680 (-) True G73679
TU99392 lncRNA upstream 187193 15081057 ~ 15081299 (-) True G73694
XM_007228197.3 mRNA downstream 1717 14868932 ~ 14889755 (-) False rbl2
XM_007228196.3 mRNA downstream 1717 14868932 ~ 14889755 (-) True rbl2
XM_022672177.1 mRNA downstream 7946 14868932 ~ 14883526 (-) False rbl2
XM_022672176.1 mRNA downstream 33876 14849582 ~ 14857596 (-) False LOC103033621
XM_007228195.3 mRNA downstream 33877 14849582 ~ 14857595 (-) True LOC103033621
XM_007228201.3 mRNA upstream 70634 14964498 ~ 14967301 (-) True irx3
XM_022672180.1 mRNA upstream 107311 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA upstream 107311 15001175 ~ 15074769 (-) True LOC103035545
XM_022672181.1 mRNA upstream 229950 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 229950 15123814 ~ 15213323 (-) True LOC103037068
TU99163 other downstream 346034 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2270116 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2326506 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2326598 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2326674 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 867900 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2983162 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3088883 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4045310 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4177074 19070938 ~ 19072888 (-) True G74838

Expression Profile