RNA id: TU99358


Basic Information

Item Value
RNA id TU99358
length 673
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G73674
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14900668 ~ 14902293 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acctgAATTTCAGGATCTGTGTCTTCAAAGAATGAAACCTTTTTAGTAGCTGTTTTTGTAAGGGTACGCAGCCTAGGCTTCGGCAGTGGGCTCTCAGAAACTGTTAAACGTGGTGAAGAATGAAGCTCTTTCTCCTGCTCTCCTTTTTCACTTCCATCTTCCTCAGCTAGTTTCACTGGAGTCTTTTTGGTAATAAACTTAGGCTCCTCTGCACTGATGGCTGAGCCAGGAGGAGGCAAATATGTCAACTTCCATTTGAGAGTCACATCAATGTAGCCACTGGCGGCGCCTTCTGAATCCACAAGCTCAAACATACCTGTAATGGCCTTATCATGGGCCAGAGAAATAAGTGGTACTCTCGCTTTCCCCAGGTATAACTGATTCTCCAAGTCCAGATCATCAAACACATACAGGATCAGAGCTTCTGCCCTCAGATACGCATCCAGATCAGCATTCATCGCCACAGGAAAGGTCACATGGTCTTCAAATTGTGGCTCACAGGTAGAAGGAATGATTGGCGTGTCGTGGTCAGGGAAGTCGTACAGTTTGTAGATGACGTACGGGCTGGGCTGGGAATGAGGGCCTCTAGATCTGAGGATACTGCAGCAGCGTACCGTGACATGGAGTTCATTTAGGCTATCATCTTTTTTGAACGAAGTGCTCGGGACTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99350 lncRNA downstream 6804 14891472 ~ 14893864 (-) True G73671
TU99309 lncRNA downstream 80192 14820230 ~ 14820476 (-) True G73644
TU99308 lncRNA downstream 80905 14819476 ~ 14819763 (-) True G73643
TU99307 lncRNA downstream 81856 14818502 ~ 14818812 (-) True G73642
TU99301 lncRNA downstream 95166 14804231 ~ 14805502 (-) True G73639
TU99359 lncRNA upstream 95 14902388 ~ 14904820 (-) True G73675
TU99364 lncRNA upstream 6814 14909107 ~ 14910680 (-) True G73679
TU99392 lncRNA upstream 178764 15081057 ~ 15081299 (-) True G73694
TU99395 lncRNA upstream 183201 15085494 ~ 15085724 (-) True G73697
XR_002650245.1 lncRNA upstream 183487 15085780 ~ 15111364 (-) False LOC103036159
XM_007228197.3 mRNA downstream 10913 14868932 ~ 14889755 (-) False rbl2
XM_007228196.3 mRNA downstream 10913 14868932 ~ 14889755 (-) True rbl2
XM_022672177.1 mRNA downstream 17142 14868932 ~ 14883526 (-) False rbl2
XM_022672176.1 mRNA downstream 43072 14849582 ~ 14857596 (-) False LOC103033621
XM_007228195.3 mRNA downstream 43073 14849582 ~ 14857595 (-) True LOC103033621
XM_007228201.3 mRNA upstream 62205 14964498 ~ 14967301 (-) True irx3
XM_022672180.1 mRNA upstream 98882 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA upstream 98882 15001175 ~ 15074769 (-) True LOC103035545
XM_022672181.1 mRNA upstream 221521 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 221521 15123814 ~ 15213323 (-) True LOC103037068
TU99163 other downstream 355230 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2279312 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2335702 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2335794 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2335870 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 859471 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2974733 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3080454 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4036881 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4168645 19070938 ~ 19072888 (-) True G74838

Expression Profile