RNA id: TU99411


Basic Information

Item Value
RNA id TU99411
length 3116
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G73710
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15123872 ~ 15126987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACATCTGAAGTTTATCATAGTCTATGTTTCCATCTCAGGATGATAAAGACCGTGTTGTGATGACCTCATGTCAGTGATCCTCTAGTCAGTGATATGAAATCTTATTCCGTTTACCACAGACTGTTATAGTAAATATACTAGATTTTCATATGATTCTCATAGtagatataaattattataaaatcagTTACATTGATTTAACTTTAGCAAAAACGCTTTGCACATTTTTGTGATGGACAGCCAGCCACTGGGTAGTTTTCTTCAGCTGGATCATGCAacaatatttatacaaaaatatttaaaacatttattataagttaGGTTATGCAGTAGGATGAGTTTGTTCAGTGTGGAACTTTACAGCCTTTGCTGCAACATGCACCCAACAGAAATCCATTTATCCACAAATAAGCAGTTCTCTGTCTAATCTGAATCTGTACAAATAAATCATATCAGAAAGCAAAAAGCTGTTAAAAGAATACTTACTCAACAAACAGTAAAGGCATGACATAAATCCATGACTTAGTGATATATTAAGGCAAAATCcatagtattaaaaataataggattcacaaaaataaaaaggtgcATCACTTTTCAGAACATTGCACATGCAAACATGATGCAGGCAATAATAACAAATATGACTTGATGAGGAAAGGTAAACAGTATCTGTTTGGGACTTTTTCAAAATGTCCCagttacaattatttttacactggactgcaaataaatgcttgttTACCATGGTAAATACTGTAGATTTGTAGTTCAGTAGATTTGTGTTTGCGCTTTGTAGATAAAAGCATATGACGTATGTATGGTTTATGGTTTCTTTCTTATATGAGCTGCTGTGGACGAGTTAACAGGTTTCAACTTATTATCGAAACACCATCAAAACATAGAACAAACAATAATCATTTCTAATGGAAGAAGCACAGCAACCAGGACTGCTACTCTGCATTAAATGAAGATAGGGTTATAAGCAACACACACTACCTCCTTCCTGAGAAGATCTACTACAATGTCTGTTAGCAGAGAGTCAGTGATTGGCCACATTTTCTCCTGTAATAGGCCATAGCTGTGTGAGATCATGAACACTGGTCTAACTAATGTTTCTAATGTAACATTTGATTGACTGATGTGTTTACTAATAGGTGGGCTGTGTCATCATGTTGTACTTCAGCTTTTAACAGCCTAATTCATTCTCTTTCCACCATGACACATACATGAACTTCAAACATGCTGTCCTTTATTGCAACAGCCAGacgatattatatattaaattaatactttcaaaaatatatttaccacAAATATATCCTAAGGTCTAAATACTGAGAATATTCATTACTTAGAGCAGTCACAAAGATGATTGTGGAGATCTGTTATACTGCACTGGCTTAAACatgacaaaagaaagaaaaaaggggggaaaaattCCCATTCCACTATGTTTTAAACATTGATGTATGTTTAATGCATGTTTTATAAGAATAATACAGTATGTGAGCCAGCATGAGTGGGCGTAAGTTTTAAGCTGACATCCTGTCATGTTGAATAAATGAAGTCCTGAGTTCCATGGCTTTGTGTGGGCTTTTTCTGAGCTGGGTTGCTGGGGCAGCTTCCAGCATTCTTTTATcacttttatctgtttttatcatTGAGGGGAAGGTTTAAAATAGCTTTATAGTTTAACATAGCTCAATTCTTATCTGAAATAAGTCTTATTATAATTTGAACTGCctcattttcatttcttttttcttgtcttttaatGTGCAGCTTCCAAACAACatctgatctaaaaaaaaaacatactatcaACGCTTTTTGTCTTATTTCAAGACCACTGATGGTGTCTGTGAAGGCTAAAAATGGCTTATTTGAAGTATGTGGTGCTCATAAGAAATGAGAAACATATAAAAGTGAAACATTAAATGGTTACGCTCCAGTTCTACATCAATGGTGTCTGATCTCATCACTAAGCACATTAATGTCTCATGCCGTTGCTCTCAAGTTCTTGTTTGAAAAATAACCTTATAACACATAAACCTCATAACCACTTCAGTATATTTTACACAGCTCACCTCATAAAAAAGTGCATGCAGTGAAATGCCACCGTAGCTCTAGAGCAGCATTTCAAGGATTCATTAAGGTGgtgctgtatgtgtgtaaaagCTGATATAGgtaggtatgtatgtatgtatatatggcACACATGGAGACTGCAGTGTCTTTAATGACTGGTTCTCACACGCATAGAACTGAAAGCAGCTACAGATTAGTGTATAACCGAGAGTAAGGCTTGTCTTCCCTGCCCCCTGTAAGACTTGAGCAGAATTGCATTGAGGCAGTAGAGTGGAAGAGTCCAGAATATTCAGTAAGATGCACTAAAAGTACAAACTACTCAGCAGCTTCTTAGAAATGTGCTCACTCTGCCTTCACTGCAGAAAGCTGCCACAACCCTCGTTTTGTCTGTGAAACAGCATATAGAGCTTCAATAACTTGAATATGCATGAGGTATAAAATTACTTGCTCGTATAAACCAAGAAAACTGTAAACATTTAGTTCATTGCTCAGCTTTTAGTCTGAAAGAAAAGACTGAAAAGTGGTATGAGACACATGAAGGTGGATCAGACTCAATGGTCCAAAGCATGCAAGAAACTTCCTGATTATTCAGAAAGATTCCACAGCCTCTCCACTAACATCCAACACCTACAAGTCCAATGGAGAGAGCTGCCAGCTACAGACTCCAAGCAGAAGTCAAGGTCAGCTCCCTTAAACCCAGCTACTGTATGACGCAGAGTGTAGAAAGCCTAACGTCTGACTGACCCACTGGACCACGGAATGATcctgagaaagagagtaaaCCACCAGAAGAACAGCTCCCATAGCTGCACTCAGATTTGAGTCTGTAGTGGAAGTGCGGGGTGTGCCAGTGCTGACATGGGTTTAGAGGAGTAAGAAAGAGGAGAGATGTTGGGTTTGATGCCTCTGGTTCTCATGTAGTGCAGGAACTGGTCTGGGATTTCAGCCAAGACGTCCTTGGCCAGACGGGCCATGCTGAGAATGTGGTTCCCCCTGGGGTCAATGTAGTCTCGGAATGGAAcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99239 lncRNA upstream 279208 14844445 ~ 14844664 (+) True G73598
TU99198 lncRNA upstream 447078 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 476310 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 485319 14637947 ~ 14638553 (+) True G73527
TU99154 lncRNA upstream 504548 14614418 ~ 14619324 (+) True G73529
XR_002650246.1 lncRNA downstream 59262 15186249 ~ 15187955 (+) True LOC111193097
TU99416 lncRNA downstream 61908 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 61908 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA downstream 61908 15188895 ~ 15189386 (+) False G73715
TU99527 lncRNA downstream 238656 15365643 ~ 15368383 (+) True G73799
XM_007228203.3 mRNA upstream 42849 15075459 ~ 15081023 (+) True irx5
XM_007228198.3 mRNA upstream 212900 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA upstream 212900 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA upstream 212900 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228193.3 mRNA upstream 300538 14814804 ~ 14823334 (+) True hsd17b2
XM_022672185.1 mRNA downstream 181542 15308529 ~ 15351344 (+) True lrrk2
XM_007228205.3 mRNA downstream 182072 15309059 ~ 15351344 (+) False lrrk2
XM_022671918.1 mRNA downstream 228748 15355735 ~ 15357894 (+) True LOC111193056
XM_015601252.2 mRNA downstream 235781 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA downstream 235781 15362768 ~ 15380544 (+) False LOC103041261
XR_002650242.1 other upstream 202869 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 474321 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2225941 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2520448 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5041732 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 1159689 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3327864 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3955829 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4401004 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 5076632 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile