RNA id: TU99525


Basic Information

Item Value
RNA id TU99525
length 1506
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G73798
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15382078 ~ 15383583 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcttctcttttttttctccacaatgTTAATAATATGTTGGAGCTTAACTAGGGTGATCATGTACGGCACTGTTTGTGCAGTTTCAGTTTTTAACATATAGGGGGCAGCAGACAACTAGTTTTCTAATCCAGAGGACATTAACCCACTTTCAAATATTCTAGCAAGGTTTTGCCCTCAAGGTCATGATGATCACAAATATCACATATATACACTCATAAGGAAACATGGGCACCCtaggccaaaaaaaaacaaaaactttgtAACAGATTTTTTGTAGCATTAAGCAGTAGGTTGATGCTgcataatatcacaatatttcactaTTTTTGCGATAATAGTTAATAGTTAGTCCAATGTGTATTCTGATGTATGATTTAGaatttttgtaattaattttttCTTCCACCTGCGCAATTTTGGGGGCACAGCAGTAAAGCATGATATCCACCCCCAAGATTCACAGTTTACCGGCAacgttttctttttctgtcatgCAGTCCATTTCTCCTCCAAACAAAGCTTTTCTTTagcataattttaatttttgtgattaggtaaaatttatatttttcttttacttgtaGAATCTTGCTTTTATTAGACAGTGTTTGAGGAATGTTAGTATATTTATAGTTGTAGCTTTGACAAGTCTAAGAATTTATAAATCTTGAATATTTAagtttctaataactttgcaaATCAGTATCTATGAGCCACCATGATTTCTATGTTTTATGTCATGAAAGCCAGACTACAACAGTAACTGTGCTTTAAGCTTTcctaaaaatagttttatttttgctacaaattatgtatttacaacttctcaatttaaaaacaaaatctgtCATGTGGCCAAGGGTGTCTGATGCATTTGATAATTTGTcaacaagtaaaaaaataaaaaatctatactCCAATAAAGTATTTCTCTTCCAGACAGGATAAACTTATATAGTGCTATATAGAGAGTAGAAGCATTGCATAAAAATAGCACTGTCAGGCATTTCTCATAATATTTGTGTGTAAGATTAAGCTTTGCAAATATGAGGGGAAAATCATGAAATTCATACCATGCCTTTATAAAATATCTAGTGTGTCCCCGAGAGTCCCTGAGATGAGCAGTTGAGGAAAGTTAACCTCTGTGTTCTGCTGAAGTTCTGGCATGGAGCAGCCCAGAGCAGTGGTACTCGTCTATCTCTTAGTGATACTTCCTCTCTCCGGACACCCTCCGCAGCACCTCATTGCTGAACTGATAGGTGAGTttcttcttgattttttttacctctccCGTCTTGCCGTAGTTTCGCAGCGCCCTGGCCATCTTCTGATAGGTCATTCTTTTCCTGTTGCCTTTCTGCAGGCCCCAGCGGCTGGCTAGAGCCTCCTTGTGCTTGGAGGAGAATTGAAAGGTGCCTCGCTCTCGGTCAACCCACCAAATACAGTCTTTCATATCCCCATCTCTTAGTAGCTCCAAGAGGAACTGATAAAGACGCATCTTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99527 lncRNA upstream 13695 15365643 ~ 15368383 (+) True G73799
TU99528 lncRNA upstream 13695 15366397 ~ 15368383 (+) False G73799
TU99526 lncRNA upstream 14482 15366397 ~ 15367596 (+) False G73799
TU99416 lncRNA upstream 192692 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA upstream 192692 15188895 ~ 15189386 (+) False G73715
TU99529 lncRNA downstream 440 15384023 ~ 15384237 (+) True G73800
TU99530 lncRNA downstream 1272 15384855 ~ 15385124 (+) True G73801
TU99549 lncRNA downstream 45165 15428748 ~ 15429645 (+) True G73817
TU99551 lncRNA downstream 71352 15454935 ~ 15457857 (+) True G73819
TU99565 lncRNA downstream 187686 15571269 ~ 15629178 (+) True G73832
XM_015601252.2 mRNA upstream 1534 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA upstream 1534 15362768 ~ 15380544 (+) False LOC103041261
XM_022671918.1 mRNA upstream 24184 15355735 ~ 15357894 (+) True LOC111193056
XM_022672185.1 mRNA upstream 30734 15308529 ~ 15351344 (+) True lrrk2
XM_007228205.3 mRNA upstream 30734 15309059 ~ 15351344 (+) False lrrk2
XM_007228215.3 mRNA downstream 20259 15403842 ~ 15418547 (+) True LOC103040017
XM_007228221.3 mRNA downstream 52816 15436399 ~ 15449870 (+) True slc5a12
XM_007228226.3 mRNA downstream 188727 15572310 ~ 15577528 (+) False svip
XM_007228228.3 mRNA downstream 241245 15624828 ~ 15627708 (+) True fancf
XM_007228230.3 mRNA downstream 333482 15717065 ~ 15738062 (+) True LOC103044315
XR_002650242.1 other upstream 461075 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 732527 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2484147 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2778654 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5299938 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 903093 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3071268 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3699233 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4144408 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4820036 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile