RNA id: TU99549


Basic Information

Item Value
RNA id TU99549
length 898
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G73817
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15428748 ~ 15429645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaGATAAGCCAGCGCTAAGCCGGAGGATCATAGAATCAATaagacagaagaaaatacaTCTAGACTAGTACTTTAGCAAGCAGCATTTTATACAACATTTGATTCGGACATCATTCAGCAACTCCCTACCTTCAACTACTGCCTAAGACACAGAGAcagtattagaaaaaaacattttggacaATGCAGCATGCATGTATATGTAGCACCAACACTTCAGTGTTAGTACAACACAGGTTGGtcattaatattttgtgtactaaCCTGTCAGATCCCACTATGAAGATTATCATTTAGTTTAAACCTACGGTAATACTCCTGGTGTGTATTATACGACTGGCACACAGCCTTAATTACCAAGTCTGAGCAGCTAATATGCCAACACACTTTGACTTAATCTGGCTGTTAAATTACAGACAGAATGATGAGGACACACTGCATATCCTACTACAGAGCGTGTGAGTTTCCCACGTCTACCAAAATCAACACATCAGTTTGGCTTGGCCACTTCTCGCTCCCGTAGATTCAAATTTGAAAGGCATGCAAGAGGCACCTTTGATGCTGAAAGCAATGAACCCAaacttatttcttttctttttttttttgtttccgcTGAACAACCCGAAACTGGATCCAGATGGACGTACTCAAGCCGCCTGCTGAATAGGAGCCAGATCTGCTAACATTAGGCAGTTAGCAAATTCACTCTCCTCCTGCTTCCAAGCTTCCAGACTCAACCTCGGAGGATAGATTAACAGGAAAGGCTGCGTTCTTCCCCTGAGGGAATATGAGTAGGCATATGcacgttattattattgtgcttAGTGGCTGAAATGATACTACAGCCTCAAACGCTCAAATGTTCCAGTGAACACTTAAAAGATAATTTAACTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99530 lncRNA upstream 43624 15384855 ~ 15385124 (+) True G73801
TU99529 lncRNA upstream 44511 15384023 ~ 15384237 (+) True G73800
TU99525 lncRNA upstream 45165 15382078 ~ 15383583 (+) True G73798
TU99527 lncRNA upstream 60365 15365643 ~ 15368383 (+) True G73799
TU99551 lncRNA downstream 25290 15454935 ~ 15457857 (+) True G73819
TU99565 lncRNA downstream 141624 15571269 ~ 15629178 (+) True G73832
TU99566 lncRNA downstream 142657 15572302 ~ 15577533 (+) True svip
TU99639 lncRNA downstream 236703 15666348 ~ 15669769 (+) True G73891
TU99698 lncRNA downstream 334895 15764540 ~ 15765125 (+) True G73941
XM_007228215.3 mRNA upstream 10201 15403842 ~ 15418547 (+) True LOC103040017
XM_015601252.2 mRNA upstream 48204 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA upstream 48204 15362768 ~ 15380544 (+) False LOC103041261
XM_022671918.1 mRNA upstream 70854 15355735 ~ 15357894 (+) True LOC111193056
XM_022672185.1 mRNA upstream 77404 15308529 ~ 15351344 (+) True lrrk2
XM_007228221.3 mRNA downstream 6754 15436399 ~ 15449870 (+) True slc5a12
XM_007228226.3 mRNA downstream 142665 15572310 ~ 15577528 (+) False svip
XM_007228228.3 mRNA downstream 195183 15624828 ~ 15627708 (+) True fancf
XM_007228230.3 mRNA downstream 287420 15717065 ~ 15738062 (+) True LOC103044315
XM_022672192.1 mRNA downstream 287420 15717065 ~ 15738062 (+) False LOC103044315
XR_002650242.1 other upstream 507745 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 779197 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2530817 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2825324 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5346608 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 857031 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3025206 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3653171 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4098346 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4773974 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile