RNA id: XM_007228226.3


Basic Information

Item Value
RNA id XM_007228226.3
length 1879
RNA type mRNA
GC content 0.42
exon number 4
gene id svip
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15572302 ~ 15577533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCGCTGGTGTAACGGGACCACCAGCTGTCTAACAAGTGTCGACGGTTCACCTCATAAACAAACGCTGTTATCTAAGTTCAGCTTCAGTAACTGCGACTGGAGTACAGTTCAGATGCCGGGCCGTGTTCAGAAGAGGTGTGCTGATGGTTTAAATGTAGTGTTGGTGTAGGTGGACAGTGTGTTATTTAGTGTGGGGTATTAGGTGTAGTCAGTTAGGGTTAGTTGGAGCTGCTGTTTACATTTCTGGCTAATCCTGTagctgtagcagcagcagcagcagtcccTCCCCACCCCGCTTTACTGCTCTTCTGGATTTGCTTTACATACTGTGGCACAATACTGTAGCTGGTAGCCGCCCCTGTTACTTAGCTGAGCGCTGTCATTAACTTTGGTGGCTGTTAAAACTTGTCTGACTGTCTgatccgctgctgctgctggaaacTGTGGGATATTATCGGAATACCAAGTATGGGGATGTGCTTGCCCTGTCTGGGTGGAGCAGCAGACGACGTTGTGGTAACGCCGGATCCTGAAACCAGAAGACATCAGTTGGCAGAAGCTgcagaaaaaagacagaaagagAGCACATACAGAGGCATTAAAAACCCAGAAGCCGtggaaaggaaaaagaaaaaacaggaggagatGGAAAAACAGGCGATGAGCACATCCCCCTCAGGAGGTGGGGGGCTTAAGTGGCAGGTTGGCTAACAAAAGGTGAAGAGAAGACATCTAGTGTGTGTCAGCTTTGAGTCCGACTGCCTGAGCAGCAAATCCATCAAAACaagaaggcttttttttttctctttttaaatacTTTCTTATAAAGCAAGCTAGATAAGACTGAGAGTGTAGCATCTAGAATTGTTTTGCCAAGCTTTCTGCAAGGTACATCATTTCAGGTCTCCTTGTTGGCCAGAGCTCTTTGCAAGACATGCCTTCTTCTCTAACACGCCAACATGTGCCAGCCAATGGATTATGTGTGAGAACTAAGGGCAGTAATGCTTGGGTTTTAATACACtcaatgtttatttatatattatgacTACTGAGAGAGCATTCAGTCACTACAACAGTTTTCTCCAGCTCAGAAGCTCACGCACCACAGTGCTTTCTTTACATATAGAATTTTCTCATGCTTGACTTCAGCTTACcagttttttaagcaatggTTCCAGATGAATGTAattttgaaatatgtttatATCACCTAAAAAAACACgttttgtaatacatttttctacTGTTTGTTCGGCACATTCAGATACGTTGGCGTTCAGTTTTCTTCTGCAGTGGTTTGGTTGAAGCATGGCAGTGCAATATAAGTTATtggttgtgtttgttttgtacaGCATGTGAAAGTGTGATTTCTAATTTAACAGAGTGAAGGTGACAGTGTGGATAGAGGATTTTGATGGTTTAAACTGGTCAGTCTGAAATTATAGCAAACACTTTGTGTGACAGTAAATGAAGTGATGATGGTTATACTTGATTactttaaaggttttttttctgttgaatACAGCACATGGATTTTCAGCATTTTATGATTTTGTTCAACTCATTTTGGAAGATATGAGACCTGCTTCTTAGTTAGGCGAGCTGTGCTCTAGGTCTAAGTGCAAAGACTTGTGTACTACAACACAGCAAGACTGCAGCTGAGATGGAGCTGTTctattaatgttaaatggtaTTCTTCACAAGATTGCTTTTTCACGTGTATTCAACAAAAATATGGCTTGTGGGACTTTTTACCCCTCAATTCCAAACCATGCTGCCGTTGTCAATACTTAGAGAGGTCCTTACTCTTCAATTAAAAACAAGATGCTGTGCCACTTTAATACTTTCATGGGTCTGAATAAATCCCTTTTATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99551 lncRNA upstream 114453 15454935 ~ 15457857 (+) True G73819
TU99549 lncRNA upstream 142665 15428748 ~ 15429645 (+) True G73817
TU99530 lncRNA upstream 187186 15384855 ~ 15385124 (+) True G73801
TU99529 lncRNA upstream 188073 15384023 ~ 15384237 (+) True G73800
TU99525 lncRNA upstream 188727 15382078 ~ 15383583 (+) True G73798
TU99639 lncRNA downstream 88820 15666348 ~ 15669769 (+) True G73891
TU99698 lncRNA downstream 187012 15764540 ~ 15765125 (+) True G73941
TU99735 lncRNA downstream 318191 15895719 ~ 15896522 (+) True G73970
TU99740 lncRNA downstream 415641 15993169 ~ 15993836 (+) True G73975
TU99761 lncRNA downstream 473181 16050709 ~ 16051543 (+) True G73990
XM_007228221.3 mRNA upstream 122440 15436399 ~ 15449870 (+) True slc5a12
XM_007228215.3 mRNA upstream 153763 15403842 ~ 15418547 (+) True LOC103040017
XM_015601252.2 mRNA upstream 191766 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA upstream 191766 15362768 ~ 15380544 (+) False LOC103041261
XM_022671918.1 mRNA upstream 214416 15355735 ~ 15357894 (+) True LOC111193056
XM_007228228.3 mRNA downstream 47300 15624828 ~ 15627708 (+) True fancf
XM_007228230.3 mRNA downstream 139537 15717065 ~ 15738062 (+) True LOC103044315
XM_022672192.1 mRNA downstream 139537 15717065 ~ 15738062 (+) False LOC103044315
XM_022672193.1 mRNA downstream 162034 15739562 ~ 15755106 (+) True sigirr
XM_007228235.3 mRNA downstream 162926 15740454 ~ 15755106 (+) False sigirr
XR_002650242.1 other upstream 651307 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 922759 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2674379 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2968886 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5490170 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 709148 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 2877323 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3505288 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 3950463 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4626091 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile