RNA id: XM_007228217.3


Basic Information

Item Value
RNA id XM_007228217.3
length 3328
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC103040324
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15381329 ~ 15414613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTATGGCTTTATTTGTCCTGTATGTCCAGAACATAAACCTacaataaagaataaaggaaTGAGTAAACTTTTGAATCAGATCAGGATATGCTGCTCTGGGCTGACATGAGTAACCatatattcttaaaaataaaagtgtccCAAAGACATGCAATAGAAGAATCACTTTAAGTTTCCTAAGAACATTTTAaggataaaaacactcacaatcccaatcacacacacaaatcctaATTGCTAAAATCCTAATAGCTGGGCCGGAATAAACTGCACTCTGTAGTACAGTTGATTGtactttgtagcacctttatttttaagggtgTACCTAACAAAATGTGTTGAGTCACAGACTTCATCTGACGTAGCTCAGATGTTGATCAGAATCAGGAACTCATTGTGGCGACAGAGGAGACAGTCAGGGACAATAAAGCACAGAACGCCAGAGGGAacgaccatttcagtttcttttCTCTGTCAGTTGCATCTGATAAAGATAACTTCTACAACATTTACATACAAAAGAGACAACAAAGGATACATATTTTGAGAAGTCATTTCAGTTCAGCttatgcaatgtttttttgagAAACTGCAAAGCAGAGAGAAGTAAAGTGAAGTTACATATGAACAGAATGGACAGCTGTGTCATTTCACCTTCAGAAGAAATGATTCCATATGATCAAGTTTGCCGACCAACGTATGACTTTTACCCGTACCTGACCAGCGATCCAGATGGACATTTGGagaGTGGTTGGGACTACCACACTGTTCACCCTCACCTCACTGAGCTGGAGGTTCCTCCGAGTCCTCACCTGACAGAACTGCATGCTCCACCCTATCCTTATGGAGAACCCTATCATCCTTCTTTGGATCCGGGGCTGGGGCCACTTCTGCCTGTGGTTCCTACTCAGTTTGCATATGTCTCTCATCCACTGTACCCGCGCTCACCTACTGCCCCCTGCAGCACAGATGATGAGGAACCAGGGGGACGCAGCCCACCTTTTGAGGTGTCAGAGGGAGAGGAGGACCATGATGATCACCATCCCGGCACTTCCAGTGCCATGTCAGGCAAGAGAAAGATGCGTCTTTATCAGTTCCTCTTGGAGCTACTAAGAGATGGGGATATGAAAGACTGTATTTGGTGGGTTGACCGAGAGCGAGGCACCTTTCAATTCTCCTCCAAGCACAAGGAGGCTCTAGCCAGCCGCTGGGGCCTGCAGAAAGGCAACAGGAAAAGAATGACCTATCAGAAGATGGCCAGGGCGCTGCGAAACTACGGCAAGACGggagaggtaaaaaaaatcaagaagaaACTCACCTATCAGTTCAGCAATGAGGTGCTGCGGAGGGTGTCCGGAGAGAGGAAGTATCACTAAGAGATAGACGAGTACCACTGCTCTGGGCTGCTCCATGCCAGAACTTCAGCAGAACACAGAGGTTAACTTTCCTCAACTGCTCATCTCAGGGACTCTCGGGGACACACTAGATATTTTATAAAGGCATGGTATGAATTTCATGATTTTCCCCTCATATTTGCAAAGCTTAATCTTACACACAAATATTATGAGAAATGCCTGACAGTGCTATTTTTATGCAATGCTTCTACTCTCTATATAGCACTATATAAGTTTATCCTGTCTGGAAGAGAAATACTTTATTGGagtatagattttttatttttttacttgttgACAAATTATCAAATGCATCAGACACCCTTGGCCACATGacagattttgtttttaaattgagaagttgtaaatacataatttgtagcaaaaataaaactatttttaggAAAGCTTAAAGCACAGTTACTGTTGTAGTCTGGCTTTCATGACATAAAACATAGAAATCATGGTGGCTCATAGATACTGATttgcaaagttattagaaactTAAATATTCAAGATTTATAAATTCTTAGACTTGTCAAAGCTACAACTATAAATATACTAACATTCCTCAAACACTGTCTAATAAAAGCAAGATTCtacaagtaaaagaaaaatataaattttacctaatcacaaaaattaaaattatgctAAAGAAAAGCTTTGTTTGGAGGAGAAATGGACTGcatgacagaaaaagaaaacgtTGCCGGTAAACTGTGAATCTTGGGGGTGGATATCATGCTTTACTGCTGTGCCCCCAAAATTGCGCAGGTGGAAGaaaaaattaattacaaaaattCTAAATCATACATCAGAATACACATTGGACTAACTATTAACTATTATCGCAAAAAtagtgaaatattgtgatattatgcAGCATCAACCTACTGCTTAATGCTACAAAAAATCTGTTacaaagtttttgtttttttttggcctaGGGTGCCCATGTTTCCTTATGAGTGTATATATGTGATATTTGTGATCATCATGACCTTGAGGGCAAAACCTTGCTAGAATATTTGAAAGTGGGTTAATGTCCTCTGGATTAGAAAACTAGTTGTCTGCTGCCCCCTATATGTTAAAAACTGAAACTGCACAAACAGTGCCGTACATGATCACCCTAGTTAAGCTCCAACATATTATTAAcattgtggagaaaaaaaagagaagacaaaagaaaaacaaatatttaaacgaatatacaatttttttttaattttgtaatatcTGGAAGTTTCTTATTTATCAGTGTAGTTACATAatatttgtttctttagtctgttaatgctaatgctaaatgaATGTGACCGTCAAGTTAAACATTCAGATCATTTAGCTATAATATATcaaaacatttacataaaaaaattcgataaaaaatattaagtttaCCATAAAGAGCTTAACAATTCTTTACTGGTGTTTTATTGCAAATCTAaccaaaatatgtgttttatgtatttttatgtccTAGGTTAGCACTGTCATCAAGGTCCAGTTAATAgcaatattttaacatatattttaagcatttaaacaccataaaaacaaatagaagTGCTACTAAACTGTATAAtattactgcttttactactgtatATGTGCAGCAGGTTCTTGCTTGGTGAGGCTCTCTGGTTATTTGCCTTTCCCATGCTATGATGTGTTAAAGTGTACTGCAGTGGTTTGCACATTGactaatttgtttgtttgtttttgctagGCAGGAGGGGAAGTGAGTTCTCAAAGGGTAAAGttctgacattttaaaatttagatctctaatagatttttttttacattcccaCATCTACACTATAGCtccggaaaaaaataagagaccacttcagtttctctgattttgctatgtataggtatatgtttgagtaaaatgaacattgttgttttattctataaactacg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002761 regulation of myeloid leukocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650247.1 lncRNA downstream 63242 15314637 ~ 15318087 (-) True LOC111193098
TU99475 lncRNA downstream 191994 15188594 ~ 15189335 (-) True G73760
TU99459 lncRNA downstream 255822 15123880 ~ 15125507 (-) False LOC103037068
XR_002650245.1 lncRNA downstream 269965 15085780 ~ 15111364 (-) False LOC103036159
TU99596 lncRNA upstream 35006 15430147 ~ 15431307 (-) True G73862
TU99607 lncRNA upstream 53533 15448674 ~ 15528462 (-) True G73870
TU99603 lncRNA upstream 54363 15449504 ~ 15453826 (-) True G73869
TU99604 lncRNA upstream 54363 15449504 ~ 15454610 (-) False G73869
TU99622 lncRNA upstream 177193 15572334 ~ 15577498 (-) True G73877
XM_007228214.3 mRNA downstream 90617 15228039 ~ 15290712 (-) True LOC103038669
XM_022672184.1 mRNA downstream 90618 15228039 ~ 15290711 (-) False LOC103038669
XM_022672182.1 mRNA downstream 90618 15228039 ~ 15290711 (-) False LOC103038669
XM_022672183.1 mRNA downstream 90618 15228039 ~ 15290711 (-) False LOC103038669
XM_022672181.1 mRNA downstream 167045 15123814 ~ 15214284 (-) False LOC103037068
XM_007228222.3 mRNA upstream 36332 15431473 ~ 15434025 (-) True fibin
XM_022672187.1 mRNA upstream 65546 15460687 ~ 15543780 (-) True ano3
XM_007228223.3 mRNA upstream 168830 15563971 ~ 15571540 (-) False LOC103042382
XM_022672190.1 mRNA upstream 168830 15563971 ~ 15571531 (-) True LOC103042382
XM_007228225.3 mRNA upstream 171241 15566382 ~ 15571540 (-) False LOC103042382
TU99163 other downstream 835891 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2759973 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2816363 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2816455 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2816531 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 366623 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2481885 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2587606 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3544033 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3675797 19070938 ~ 19072888 (-) True G74838

Expression Profile