RNA id: TU99604


Basic Information

Item Value
RNA id TU99604
length 3791
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G73869
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15449504 ~ 15454610 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggagagaactaaagttagaaatgagctagctaaccttagctatgTGCTAGCTAATCGTAACAACgagttaactaaaatattaatgttatcggggagagaactaaagttagaaatgagctagctaaccttagcgacaagctagctaaccaaaGCAACGAGCAAACTAACTAAAATTTACCGGGGTGAGAACAAAAGCAGCGACAAGCTAGATGATCTAAGTGACGAGCTAGCAAtgatactaatgttaccagtaAGTGAACTGAAGCTAACGAAAAGCTAGCTTACCTTtacgacaagctagctaaccttagtaacAAGCTAtctaaaatgctaatgctacggGGGAGAGAACTACCTTTAGTGATGAGTTAACCTAAGTGATGAGCTGTCTGATTTTTTTGGTCTCTGTCTTGGATTTGGTCTCGTTTtttctggtcttggtcttgactctgacttgaCTGTAGCGGTCTTGACTACAGCACTAGGCTAAATTTCGAAACATTTACAGCAGCAGGTGTAATGTTTAAGATATATCTATCAATTAAAGCACTAGAGGTCACAGCTTcgtaaaaaatgtgttaaataggcaaaaatcttttttttttagttaattttctgTTGGCTTCTTATATtatgaaaatgtttgtttagtccacattttggattaattatttattttctcttttgtttaaaaatttctgtttgttttgttacttaagtacaaaatctgttttacagttgctctgtgtgtttgtgtgtgtgtgtgtaagagagagagagatggagtgtgTCTTTTGTAGAGCTAATGAACTGAATGCTGCTAGCATGCTTCTCAGTCTTCTTTACCACCACCCAAGGCAATGTATCTGCTCTCCTCAGGCCCCTGTCTGTGTTTGCAGGCGATAGCAAATCGATAGGTTATTTTCTTAGCTCATAATTAGACCTAAACATGCTTTCTAATCTACATATTTTTGCACTTGCATGGATATTAATGCATACTAGTACATCACTGAGAGGAAGGAGCACTTTAAAAGCATGGCTTGTTTCCCTGTACTGTACctcaacaacacaacacaacacagtagaaaaCAATACAACACATTGCGACACTTACCTGGTTTGGGTCTGGAGCACAATATAGCACAAGCATCTGTTCTGCAGTGAAGGaactttaaaatgtgaaatcatTGCTTTTATTTCCACTTTAAGGTGAAACTGTCacaaagctgtatataataaCTTAAGCATTTAGTTCAACACAAATGTATTCTTTACTTTATAAACACtatagtttttttatgatttgcAACACTTAGTAATGCAATTGCAGGCCTGGTGGTCCTGCAGGGAGCTGTGTCGTTCAGGGGGCGAAAGGCTTCTCCTACCTTTGGCTGAAATGTAAATGAGTGATTTGTAACATGCTAATCTCTTGCcatgatatgtgtgtgtgtgtggtatatcgGCAAACTATGCATGATCTCAGCCATGACAGCTGTGTTCATCTGGAGTACCTTGAGAAACACACGTGTGTATTGGTGCACTTTTACTGTGGAGTCTGCATGGCCCTCATGAGCTTACTGCTGAGAAAATCTGATCTGCGATCAGCGAGCAGCTGTTTCTCATATTCACTCAGAATATCTAATCTCACTCTGGATCTGAGCTGTCTACGCTCCACCCATCAGTTTAGGCTAAGAGTCACTACTTAATGCTGATTTAGTGGTTTAATTAAAGCACTGCTCTGTGGACTGTGCTGTGTTACAGCAGATCAAGACTAATTCAACATAAAGTACTGATACAAGGCTTAGTTACATTTTACTTATAATAAAACAGCACTATAAAAATATGACTTAAAGCAGGATTAGTTAGTTCCTGCGAACATTATCCTCTCTGCTCTACCAAAGATGCATAGTACAGTTATTGGTGAACTGAGCCCAGAGCAGCAACAGCGACACTGTTCTCCATATTGCAAATCAGTGGCGTAtcaaaatgactttaaattgGTTAATTTAAGGTAAACAAATTACATAGGGTTGTTTTAATAggaattgtttttttacatataagAATAGAAgagtttttttactatttaatttcAAAGTTTGCCtttttacataattattatatttcttgGAAAAGGctcaaatgtttaatttcaatatgtttggattaaaaaaataattaatacatttatttcatttatttttttccccattttctccccaatttacacactcattaggactccctctattaATAGTAACGCCCCAActccaggagggtaaagactaacacatgcctcctctgatacatgtgaagtcagagtccgcctctttttgaactgctgttgatgcagcattgtcgagtagcatcacgcAGCttctcggttccgatacatcaacTCACAGATGCCAAGTGCTAAGTGACATTAtccttaggagtgatgtggggaaagagcaccatctacccacacagagagagcaaagccaattgtgttctctcagggctccgttagctgacggcaagctacatgaacagaatTCGAatcggcgatctcctgatcatagtggcagcacataGCCCGCTGAACCACTCAAAGCCCATTTGGAttcaatttttaaatgtaatgattTAAACGTATAAATTGAAAAAGTTGTTTCATGTTTATCCCAAGCATGTTTTATTCAAAACACATACTAAAGCTATATAATTTGAAACAAATAAACCTCAAAATTTCTATAGTGTACTTTGTATTTTCTAATGGATTGAAATAGATTATTGGCAGCACTGGTTAAGCTTGTCTGATCTAAAATCAGACTGTCACTGCTGGGTGGAGCATGGACAGATCAATTGGCCTTGTATTTGTTATTTCACCTGTTTATCAGGGCTGTTTAATGGGTGAATATCATTCTTTAGTATCTGGTGACAACACTGTTTGCTGTATACACATTGTCCATATTGAATATTCTTGGCAAAAGCACACAACAACAGCATCAAAAAGTTATAATGCCGTAAGCAAAGCATGCAATATGCCATAGCGATATGATCAATACTTCAGATCAGTGTTTATTCATTAGGAACAAAAGCACTTGTTATTGTACCAGATGCTTCAGTCTAGCACAgttttctcaaccctgttcttgGAGGCTCACTGTCCTGCACGTTATTGTGTTTCTTctgcttttacacacacactgtaactcAGTAACGAGCTGTTAATGAGCTGAtaagttggatcaggtgtgttttaAACAGGGAAAACACTAAAAAGTGCAGCACAGTGTGCCTCTGGGACCAGGGCTGATAAACGCTGGTCTAGCACACTAGCACATTCAGTTATTTTCAAATCAGGTTTAATCTAAAAAGCAATGTGGGTATGGTTTGATATTCGACACGGGTTAGGGTTAGAGAGAGTTATAAGGCAGAAAGCAGTTTATTGGGAGAGTTTATTAATATGCAAGAATGTGATATGCAACATTGCAATGATGTAATGGTTATTGCATAATGGGTTAGTGGCAATATGTACTCACTCACTTGGGCTGCAATTAatagaattatttaaataacagcCCTCTGACTTCTGATCTTAGAATAGTAGACAGAAGTCCAGCTGAGAGTCGTGTTTGAAGAGGGTAGAGCGTTTCAATAGAACAACACAGCACATTCTGATTTGTACTCAGTACTATTGTGACATTAATGGTATCAGCAATGTGCTTTGTTTACACCATCCCtgtttacatgtaaaaaaaatgaatatgaaaataaaattgtacAAAAACTGTCTGTAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99596 lncRNA downstream 18197 15430147 ~ 15431307 (-) True G73862
TU99585 lncRNA downstream 34891 15386679 ~ 15414613 (-) False LOC103040324
XR_002650247.1 lncRNA downstream 131417 15314637 ~ 15318087 (-) True LOC111193098
TU99475 lncRNA downstream 260169 15188594 ~ 15189335 (-) True G73760
TU99459 lncRNA downstream 323997 15123880 ~ 15125507 (-) False LOC103037068
TU99622 lncRNA upstream 117724 15572334 ~ 15577498 (-) True G73877
TU99658 lncRNA upstream 189211 15643821 ~ 15644252 (-) True G73910
TU99834 lncRNA upstream 398692 15853302 ~ 15953813 (-) True LOC111193099
XR_002650249.1 lncRNA upstream 472874 15927484 ~ 15952104 (-) False LOC111193099
TU99883 lncRNA upstream 649006 16103616 ~ 16108725 (-) True G74091
XM_007228222.3 mRNA downstream 15479 15431473 ~ 15434025 (-) True fibin
XM_007228217.3 mRNA downstream 54363 15381329 ~ 15395141 (-) False LOC103040324
XM_007228216.3 mRNA downstream 54367 15381329 ~ 15395137 (-) True LOC103040324
XM_022672182.1 mRNA downstream 158793 15228039 ~ 15290711 (-) False LOC103038669
XM_022672187.1 mRNA upstream 6077 15460687 ~ 15543780 (-) True ano3
XM_007228223.3 mRNA upstream 109361 15563971 ~ 15571540 (-) False LOC103042382
XM_022672190.1 mRNA upstream 109361 15563971 ~ 15571531 (-) True LOC103042382
XM_007228225.3 mRNA upstream 111772 15566382 ~ 15571540 (-) False LOC103042382
XM_007228227.3 mRNA upstream 126426 15581036 ~ 15621857 (-) True gas2
TU99163 other downstream 904066 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2828148 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2884538 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2884630 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2884706 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 307154 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2422416 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2528137 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3484564 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3616328 19070938 ~ 19072888 (-) True G74838

Expression Profile