RNA id: TU99698


Basic Information

Item Value
RNA id TU99698
length 478
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G73941
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15764540 ~ 15765125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATGACACATGTCTGCATAGCAAACGCCCCCACAAGACACAATAAAGATAGGGAAGTGAACTTACCCGTTTGTCCCCAGCTGTAATGTTCtgcagggctccggcagctgccTCTCGGGTGATGGTGTTCACTTCACACCGCTGCAGGACTTTGTTATACAGCTCTACCACCTTCGGATGCCACAGCCACTCAATGCCCTTTGGTACTCGAGCCACCTCCGTAAACGTTGTCAGGTCCTTATCTTGTCTGTCTTTTGCTTTCTTGCTCTGAGGAGTGAAGCAGCCGATAGCCTCTCCTTTGGATGAAGCCTGGGCTCGTGTGGGACCCTCCAAACGCATGAGTGCTGAGGGGGGAATCTCGCTGTACAGCTGATAAGACAGGTTtcgcaatacacacacacaattctccACTCCCTGCCacaggaacagagagagaaagagacgatTAATGTTTATTCATTCATACAGTGAATATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99639 lncRNA upstream 94771 15666348 ~ 15669769 (+) True G73891
TU99565 lncRNA upstream 135362 15571269 ~ 15629178 (+) True G73832
TU99566 lncRNA upstream 187007 15572302 ~ 15577533 (+) True svip
TU99551 lncRNA upstream 306683 15454935 ~ 15457857 (+) True G73819
TU99549 lncRNA upstream 334895 15428748 ~ 15429645 (+) True G73817
TU99735 lncRNA downstream 130594 15895719 ~ 15896522 (+) True G73970
TU99740 lncRNA downstream 228044 15993169 ~ 15993836 (+) True G73975
TU99761 lncRNA downstream 285584 16050709 ~ 16051543 (+) True G73990
XR_002650250.1 lncRNA downstream 369359 16134484 ~ 16147862 (+) True LOC103025699
XR_002650251.1 lncRNA downstream 369359 16134484 ~ 16147862 (+) False LOC103025699
XM_022672193.1 mRNA upstream 9434 15739562 ~ 15755106 (+) True sigirr
XM_007228235.3 mRNA upstream 9434 15740454 ~ 15755106 (+) False sigirr
XM_007228236.3 mRNA upstream 9434 15740645 ~ 15755106 (+) False sigirr
XM_007228230.3 mRNA upstream 26478 15717065 ~ 15738062 (+) True LOC103044315
XM_022672192.1 mRNA upstream 26478 15717065 ~ 15738062 (+) False LOC103044315
XM_007228241.3 mRNA downstream 20828 15785953 ~ 15795750 (+) False LOC103046771
XM_007228239.3 mRNA downstream 20867 15785992 ~ 15798451 (+) True LOC103046771
XM_007228242.3 mRNA downstream 45284 15810409 ~ 15814622 (+) True nr2e3
XM_007228243.3 mRNA downstream 56268 15821393 ~ 15828549 (+) True stoml1
XM_015601319.2 mRNA downstream 66332 15831457 ~ 15839847 (+) True LOC103021835
XR_002650242.1 other upstream 843537 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 1114989 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2866609 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 3161116 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5682400 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 521551 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 2689726 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3317691 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 3762866 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4438494 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile