RNA id: TU99735


Basic Information

Item Value
RNA id TU99735
length 208
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G73970
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15895719 ~ 15896522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtggtgtggagtgtgtgtggtgtgggttatgtgtggtttgaagcgtgtgtggtgtggggtatgtgtggtttgaagtgtgtgtgtgtggtgtggggtatgtgtggtttgaagtgtgtgtgtagttagtgtgtgtgtgtggtgtggggtgtgtgtggtttgaagtgtgtgtgtgtggtgtggggtatgtgtggtttgaagtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99698 lncRNA upstream 130594 15764540 ~ 15765125 (+) True G73941
TU99639 lncRNA upstream 225950 15666348 ~ 15669769 (+) True G73891
TU99565 lncRNA upstream 266541 15571269 ~ 15629178 (+) True G73832
TU99566 lncRNA upstream 318186 15572302 ~ 15577533 (+) True svip
TU99551 lncRNA upstream 437862 15454935 ~ 15457857 (+) True G73819
TU99740 lncRNA downstream 96647 15993169 ~ 15993836 (+) True G73975
TU99761 lncRNA downstream 154187 16050709 ~ 16051543 (+) True G73990
XR_002650250.1 lncRNA downstream 237962 16134484 ~ 16147862 (+) True LOC103025699
XR_002650251.1 lncRNA downstream 237962 16134484 ~ 16147862 (+) False LOC103025699
TU99787 lncRNA downstream 238688 16135210 ~ 16146624 (+) False LOC103025699
XM_015601319.2 mRNA upstream 55872 15831457 ~ 15839847 (+) True LOC103021835
XM_022672194.1 mRNA upstream 55872 15831457 ~ 15839847 (+) False LOC103021835
XM_007228243.3 mRNA upstream 67170 15821393 ~ 15828549 (+) True stoml1
XM_007228242.3 mRNA upstream 81097 15810409 ~ 15814622 (+) True nr2e3
XM_007228239.3 mRNA upstream 97268 15785992 ~ 15798451 (+) True LOC103046771
XM_007228246.3 mRNA downstream 55415 15951937 ~ 15979103 (+) True stra6
XM_007228249.3 mRNA downstream 130940 16027462 ~ 16031438 (+) True LOC103023069
XM_007228252.3 mRNA downstream 135852 16032374 ~ 16040050 (+) False neil1
XM_022672196.1 mRNA downstream 135994 16032516 ~ 16040050 (+) True neil1
XM_007228255.3 mRNA downstream 192343 16088865 ~ 16093616 (+) True LOC103024759
XR_002650242.1 other upstream 974716 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 1246168 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2997788 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 3292295 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5813579 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 390154 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 2558329 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3186294 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 3631469 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4307097 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile