RNA id: XM_007227994.3


Basic Information

Item Value
RNA id XM_007227994.3
length 2049
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC103028966
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8691950 ~ 8726635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCTGTTTGGGGAGTGAGTGGTTTCCATATTCGCAGCGCGAGGCGGACGGAACAACAATATGGAGCCGGAGATGGAGGACAAGACGCTGGAGTTAATGtgcTCTTTGCCTCGCTCTCTCTGGCTGGGTTGTTCCTCGGTAGCAGAGAGCCTGTGCGCTCTCAGGTGCCTGCAGAGCCTCCCCACCTCCCGGGCCCACAACCAGAACTTGACAGTAATGGAGTCACAGAATCTGACTGATGACCTCTCGCCAAAGAAGACCACTGTGTTTAAGCTTAGTAATGGTTCTCTGTCGAGGAAACGTCCGTCTCGGGTGAGCTttgagaaggagaaggagatgTGTATCCAGATGTTCGAGCAGTGGTCAGAAGCTGACCAGGTGGAATTTGTGGAGCACCTAATCTCACGCATGTGCCACTACCAGCACGGCCACATCAACTCTTACCTCAAACCCATGCTGCAGAGAGACTTCATCACTGCACTGCCAgCCCAGGGCCTGGACCACATAGCAGAGAACATCCTGTCGTTCCTGGATGCTCGTTCTCTGTGCTCGGCAGAGCTTGTCTGTCGGGAGTGGCAGAGGGTGATTTCAGAGGGAATGCTTTGGAAGAAGCTTATAGAGAGGATGGTCCGCACTGATCCACTGTGGAAAGGCCTGTCTGAAAGACATCAGTGGGAGAAGTACTTGTTTAAAAACCGCACAAACGAAGTCCCACCTAACTCGTATTATCACTCCCTCTATCCCAAAATCATACAGGACATTGAGACAATTGAGGCAAACTGGCGCTGTGGCAGACACAACTTGCAGAGAATCCAGTGCAGATCAGAGAACAGCAAGGGGGTCTACTGCCTCCAGTACGACGATGATAAGATCATCAGTGGTCTCCGGGACAACTCCATAAAgatCTGGGATAAGCACAGTTTGGAATGTTTAAAGATTCTGACGGGTCACACCGGTTCAGTTCTATGTCTGCAGTATGATGACCGAGTCATAGTGACCGGCTCCTCAGACTCCACTGTCAGGGTGTGGGATGCGAGTTCTGGTGAGGTTCTGAATACTCTGATCCACCATAATGAGGCAGTACTGCACCTGCGTTTCTGTAATGGACTGATGGTGACGTGTTCTAAGGACCGCTCCATCGCCGTGTGGGACATGGCGTCTGCGACTGATATCAGCCTCCGCCGCGTTCTCGTTGGGCACCGGGCCGCTGTGAATGTTGTCGACTTTGATGACAAGTATATCGTCTCAGCATCAGGAGACAGAACTATAAAAgtgtgGAGCACCAGTACATGTGAGTTTGTGCGGACACTAAACGGTCATAAGCGAGGTATCGCCTGCCTCCAGTACAGAGACAGACTGGTGGTCAGTGGATCCTCAGACAACACTATACggttgTGGGATATCGAGTGTGGTGCATGTCTGCGTGTGTTGGAGGGACATGAGGAGCTTGTTCGCTGCATTCGTTTTGACAACAAAAGGATTGTCAGTGGAGCATACGATGGgAAGATTAAAGTGTGGGACCTGCAGGCCGCTTTGGACCCTCGAGCTCCTGCCAGCACTCTGTGCCTGCGCACACTAGtgGAGCATTCTGGGCGTGTGTTCCGTCTGCAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGATGACACCATCCTTATATGGGACTTCCTGAATGTCTCTGCTAACGGGCAGTCAGAGGGACGATCGCCCTCTCGCACCTACACGTATATCTCCAGATAGCAGGTGCCTCTAATGTGTGCCAGTGTGTCCTGGGAAAgctgagagctgattggctgttggcTGTGTCTGTCACAGAAAGGTGTCCAGGGAAGCACCTCCTCCTTTTCATCTCTCAAAACTTCTCCAGATGATAACCTTCTCCAGTAACACTCCACAAGTTtagcctcaaaacacacacatacacacacacaaacacacacgcgcacacacacacacgtacacactcaAATGAGCCAAAATAGAcagtgactctctctctctttctttcgctctctctctctctctctctctctctctctctctctc

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03362 FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97390 lncRNA upstream 207194 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 253862 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 271652 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 290479 8401246 ~ 8401478 (+) True G72183
TU97356 lncRNA upstream 299480 8392261 ~ 8392477 (+) True G72175
XR_002650234.1 lncRNA downstream 57937 8784572 ~ 8793176 (+) True LOC111193079
TU97464 lncRNA downstream 228720 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 363241 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 415727 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 500880 9227515 ~ 9227886 (+) True G72285
XM_022672044.1 mRNA upstream 4488 8674849 ~ 8687469 (+) True LOC103031395
XM_022672043.1 mRNA upstream 50609 8440137 ~ 8641348 (+) True spock1
XM_007258573.3 mRNA upstream 966144 7719880 ~ 7725813 (+) True mars2
XM_007258578.3 mRNA upstream 1017294 7671558 ~ 7674663 (+) True LOC103027348
XM_022672039.1 mRNA upstream 1039467 7612712 ~ 7652490 (+) True LOC103027052
XM_007228009.3 mRNA downstream 83393 8810028 ~ 8819533 (+) True LOC103033931
XM_007228007.3 mRNA downstream 99879 8826514 ~ 8857516 (+) False LOC103031822
XM_007228005.3 mRNA downstream 99879 8826514 ~ 8857516 (+) False LOC103031822
XM_022672071.1 mRNA downstream 102826 8829461 ~ 8857516 (+) False LOC103031822
XM_022672068.1 mRNA downstream 102827 8829462 ~ 8857516 (+) False LOC103031822
TU96877 other upstream 1806416 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2153163 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2654209 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2655083 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3186319 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 416264 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1351944 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3876717 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4144849 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5922194 14648829 ~ 14649551 (+) True G73533

Expression Profile