RNA id: XM_022672066.1


Basic Information

Item Value
RNA id XM_022672066.1
length 5890
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC103031822
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8826514 ~ 8857516 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTATTTGGTTTTAAATCTTTTGTTTGTACAAAGTGTAGATTGAATCATTCCATATTTTCGTGTGGAATTTGGCTTCTCGTTTTAGCCAACAATGATACTTACTTACAGTGTTCACTGGACAATATATCGAACAATGGATGCTTGCAGAAGAAGTCCGCTGATGAAAAGGTACGTTGTCGCCTTGATATTGTTCTCCATTTTAAAATCAGCATCAGCTGTTACCCATTACTCTATACCTGAAGAAATGGAGGAAGGCTCTGTGGTAGCCAATTTAGCAACCGACCTTGGACTGGACGTTAAGACACTGAGCAAAAGAAAGATAAGGCTGGATACATTGTCTAATAAGAAATATTTGGACATTAACAAAGAGACAGGCGAGCTTTTCATCTCGGAGAGGATCGATAGAGAACATCTTTGCATTTCTAAGTCAGCAACGACGTGCATGTTGAAGCTGGATGCAAGCATCGAAAACCCTGTGAGGATGTTTAACATCGAACTGGAAATAATTGACATTAACGACAACGCGCCCAGTTTCAGAAGGGATATGATGCATTTAGACATTTCTGAGTCAACCGCAACTGGCGAAAGATTTTCATTGAACAATGCAGTCGATTCAGATATTGGTGTAAAttctataaaaacatattatctTAGCGACAGTGATCACTTTTCAATTGAAATACAAACGAGTAGAGATGGGTCAAAATTTACAGATTTAATTCTGAAAAAGACGCTTGATAGAGAGGAGCAGGCTGTTCATAATTTAATACTCACTGCTGTAGATGGAGGAGTGCCCGCGCGCTCTGGCACAGCCAGCATTATTGTCCGCGTGCTGGATACTAATGACAACGCCCCATACTTTAATAAAGACAGTTACACCATCAAATTAACAGAGAACTCACCGACAGGAAGCCTTGTTGTTAAATTAAATGCAACAGATACAGATGAAGGGTCAAATTCCGAAATCGTGTATTCCTATAGTTTATATACGTCAGAGAAAACGCAGGAAACATTCAGCTTAAATCCAGACAATGGTGAAATAAGAGTTAAAGAAATGATTAATTATGAAGATTTCAGGATTTATGATATGGAAATCGTGGCAACAGATAAAGGAGTGAATTCATTGTCTGGGAAATGCAAAGTAAGAATTTTAATCACGGATATGAATGACAACCATCCTGAAATTTCCATAAAGTCTTTTACTAGTCCAGTTAAGGAGGATATAGCTGTAGGTACAGCCATTGCAGTTGTCAGTGTGAGTGATAAAGATTCAGGTCAAaatggtgaaatagatgttcatATATCTGATAAATTGCCCTTTAAGCTCAGAGAATCTTCTGATAATTATTATGAACTCGTGGTATCAGAACCGTTAGATCGTGAAAAAGTTCCAGAATATGACATTACATTTACCGTCACTGACAGAGGAACTCCTCCGTTATCTGATAATGAAACTATGACTCTAGAACTACTGGATGTGAACGACAACGTTCCTCAGTTTCCACAATCATTCTACACCATTCAGGTGAAGGAAAATAACGCACCAGGAGAACTACTGAGCTCCCTCACAGCACATGACCCAGACCTCCATGAAAACCAGTATCTAGTTTATTTCATCATAGAAAAAGAAATAGTGAACACCTCCATGTCCATGCTGTTCTCCATCAATCCAGAGAACGGAAACCTTTACGCACTAAAGACGTTTGATTATGAGATAGAGAATGAGTTCCTTTTCCACATCGAGGCCAGAGACTCTGGTGTTCCTCCGCTCAGCAGTAACGTGACCGTTCACATCATTATAATGGACCAGAATGACAACACACCACTTATAGTGTCTCCATGGCGCGCGCATGGCTCAGTAGTGGAGGAGAAAATCCCCAGATCCACCGATAAAGGAACTCTAATAGCCAAAGTGATCGCTATTGACACTGACTCAGTGCACAACTCCCGGATCACGTACCAGTTCCTCCAGAACACTGATGCTACTTTATTCAGCTTGGACCAGTACAACGGAGAGATTAGGACCATGAGGATGTTCAGTTACAGAGACTCTCGCCACCAGCGGCTGGTGGTGATCGCCAAGGACAACGGAGAGCCCTCGCTCTCTGCTACAGTCACCATCAAACTGTCCACGGTGGAGACCGCGCTCAAAACCTACGCGGATATGACTGAAATTCCTGAATATGACATCTTTTCAGACTTGAACCTGTATCTGGTGATCGGATTGGGTTCTGTCTCATTTCTCTTACTCATCACCATACTGGTGACCATCGTGCTGAAGTGTCAGAAACCCAAGCCCAGCAAAGCAGGTCCTCCCTGTAGGAAcagtgtgatcagtgagagGAACTCTACCATCGCAGATTCCACCCTGGTCTCCAACGATGCCTACTGGTACAGTTTGTTTCTGGCAGAGACGAGGAAAGGAAAGCTGGTAGTTAGACAACCCGTGCCAAAGGGGTCGAGATACATCGTGTCCAGTATACCGAGGAGTACAGGACTGACCGAGACCAGCGATTCAGCTGCATCTACTTTACAGGCATCCACTACCACCAGCAGCAGTTCCTCATGAGGCCCCTCCCAACCCTTTTCAGTAGAGTGATGTGGAGAATATCCTGACTGACCCAAACAAGGGTGGACCACGTCCAGCCAACGCCTTCTCACCTGCCTGGTTACCTGTCTCCTTGCAAGGATTCTGTCTAACTGCACACACAATCTAACACACATTTCACGCCCTTGGCTTTCAACTTGCATAAATGCAGATAATCTAACTGACTGGACAGAGGGAAAACTCTGTCGCTGTTTGTGACTGATGGATGCGCTTACACGGATATCAGCAATGCACATCTAGCCTCCACCTCAATGCAAAACCTTGTGAGCCCTCACAATGTCCAATGTGTTTACTGCATTAAACTCGGATGTTATTTCAACGTGCATGGATCTGCATGGCTAAGTCATTGACTTTCATTCTGCATCTCAGTGATCTaagaaacaagcaaaacaaaaaaattcctAAAATGCAACCTACAACAGAgaataaggaaaaaaaggaagcaCAAAATGGGCTGATGTGAAGGGTCTCTGGAACTGTGTTAAAGGTATCTGCAGCCTTCTTCTAATGGATGTTTAATtatgtacttatttattttcaatgtattttattatttaatacaatactaccaagtaaaaaaaagcatcaaCATGTACTATTACTGGAAAAAGGGAAAGTGTTGTTTTGTGAAAAGtctgtgtacatgtgtgtatgGTACCACATCTTTGTCACTGTTTATATCAATTGTTTTTTCTtgtgtaaaaatgaaagaacaGAAAAGACACAGAATATTGTTAACACATACTTGTATATGACAGTATGCTTGTCTGGCCTATGTTTCCCCTCACATAAGTGTCTCTTTTCTAAAACAAATGTGTTGCATAACAAAAGTGTAATTTTGCCATTAAAGTATCTTTACAACTATTGTAGTAAAGATGCATAGGTGACACCTGACACTTGCTCCCCTAAGTGCTCTGCTAAGTAAATCTTATGCTTAATTATTCAGAAGACACATACTGCCAGTCAACTGTCCCTGCAGTTACATTAAGACTCATACAGTAGCTCCTTTGTCTACACAGACTCATAAAAAAAGAGTCATAAAAAATATGTTGGTCTATGATAAGGTTACGTTGCATTGCTgcacttttttccacaaaaggcCAGTGTGACTGTCAGTTTTTAAATTCTATTTAAGTAGAAACACATAACTTTTATTCAGTCCATCATCAAACAGTTTATTTGAAGCTTGTTTGGAGTAAAAACCAGACAAAGCTTTACAGGCCCTTTCCTTTACAAACTAAACTGGTTAAATGAACCCTGCTTTACAGTCTAAACAAAATGCAGTTGATAtgttttcattaatatataaattaggTTGAGAATATTTTGATTTATAATAGCATTATAATggtaattaaatgtttatttgagaCAATAACAAGATCTTTTCAGTGAAATTAATTTTCCATGAACAATGacactataattaatatatagctTCCTGTAGCCTATCCTGCAAGCATTGTGGTCAAACTTTAAACAacctatttacattttatatacgtTTTTCTAGGCTTGTACTACATTATGCTTGTTTTAAGCAAATCAAAAAATGACATCTGATGCtaaatatttgtttagtttatgcaAAAATGTTTTGGAGGTATTCTGATGTATTTGGAGGTACTGAAATGTTACATACTGCTtaggctgtaaaaaaaacagttgcagCATTATTTTGTGGTTTCATATATAACTGGTGTACAGGCtgttaaaagtgctttttgtgaATGATTACATTAGTAGTGCAATATATTATGTTTCCATTAATCCTTAGTATGCAGTCAGTATACAGTGTCTTATCATTCTGCAGATGTACTATATATTCCAACATATATTCATTGTGAAcagtaatcagtgtttttttttccaaatatgtgtATGGTGTTCTGATGACTTCCTCAGGCAGTGCACAATGTGAGGTCAAAGTACTAGGATACACACAGTTGGATTTATAGAGATATCAATTGCTGACATAGAAGCTGTGGGAAGATATGTTACCTTTTGTTTTGAAGGCCTGAATAAAAAAGTGTTCTTAACCTTGAAGCCAAGGGCCTGAGGGGTGTTTTTGTCAAAACAGACTATTTTGCATGCAAAGTGTTAGAGAATCAGAGACTAATTGCTAAATGAGGATGACAAAAGATGAGtatttttgtctgtgtgtgtgtgaaagagagagagagagagagagagagagagagaggaatgaggTATATAGATGAAAGAGCTGCAAGTAGGTCATCTAAGCTTCTGAAAGTAGGTATTATTAATTTCATCAGAATCCTTTTTTTCTGGTGTAAAAATGGCCTTTCTATTTATATTGACCAGATTCCTAAAGCAGAAAATGTTCACCCTTTTACACTCCCTTTGTTGTTTATCTCCTTGTAAGATTTTACAAGCTTATATTCCTATTTCATAACTACAGGAATGATGTCTGGATGCTCACATCATTAGAGAGAAATATTGTCTAGTAGGTTCTGGCTGATTGATGGGTATTTATTGTTAACATAGAGTTTAAATATGTACAATGTTTATTATTTGCAGCCAAGCTTTTAACTTTTTTCCACCAatgcatttcattttaaaatgtaaggaaagAGCCTTAGTTCAACCTCAGTAAATCTGTGTCCTGCCTgagaaaaacatcatcagattctCTCCTTCTATCTTGCATTCCAGCATATATTACCAGTCTTGTAAGAGCATATATATcctaggaaataaaaaaaaactgtcagtctagaaaaatatagaaattcAGCATATCCTCAATGATATGATATTGTGTTTGAAATTAACTGTATGCTATTGTACTGACTTATAACAGAATGCATTTTTCGTTCTAAAAGGCATATGATGCACATTGTTCAAATCTCTAGTGTGCTCATGAGGATTTGGCTGTCTGAATGTCTGTGGTGATTGACTGGAGTTAGGGAGaggaaacaaaaacattattttgctATGTTGGAACATTTTATTACTATGATTAATTCTGAAGTGactgtgcttttttatatttactgcttCTTTTTGTGCATgaaacagtgtttatttgtatgtacaTGGAGCAAATGAAGAGGTGAATAAATCTAAAGTAGActgataaaatatgtttatttacatatctctggttttatttacttttttgaggTTCTGTAATGTTACAACTTTATGCTTATTTTTGGATCATTATGAGCTGTGATGTTCGTTCTCATTGCTAAACAAATAACACTTTTCTATGTAAATACAAAAGTGTGAATAAAATTCATGGTTAGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 39349 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 347762 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 394430 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 412220 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 431047 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 97839 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 232360 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 284846 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 369999 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 734791 9592307 ~ 9639931 (+) True G72305
XM_007228009.3 mRNA upstream 12992 8810028 ~ 8819533 (+) True LOC103033931
XM_022672045.1 mRNA upstream 105890 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA upstream 105890 8691957 ~ 8726635 (+) True LOC103028966
XM_022672046.1 mRNA upstream 105890 8692321 ~ 8726635 (+) False LOC103028966
XM_022672044.1 mRNA upstream 145056 8674849 ~ 8687469 (+) True LOC103031395
XM_022671908.1 mRNA downstream 4604 8862120 ~ 8868955 (+) True LOC111193048
XM_022672049.1 mRNA downstream 11612 8869128 ~ 9035761 (+) False LOC103030246
XM_022672081.1 mRNA downstream 15134 8872650 ~ 8873657 (+) True LOC111193085
XM_022672048.1 mRNA downstream 18351 8875867 ~ 9035761 (+) False LOC103030246
XM_022672056.1 mRNA downstream 21423 8878939 ~ 9035761 (+) False LOC103030246
TU96877 other upstream 1946984 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2293731 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2794777 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2795651 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3326887 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 285383 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1221063 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3745836 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4013968 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5791313 14648829 ~ 14649551 (+) True G73533

Expression Profile