RNA id: XM_007228009.3


Basic Information

Item Value
RNA id XM_007228009.3
length 4295
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC103033931
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8810028 ~ 8819533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGGAAAATCAAAGCGCAGCCTCctcacacacgcgcacacacacaaccgCGGAGCTGCGCGCGAGGAGCTTCTTCAACGGCTCCTACCAACTTTACTTCATATATCCACGGTGTACTTTCTCTGTAATGAATTACGCACGAAAAAAATTCCTATACTCACATAGCTTTTAAtgtgaaacttttttattagttttataattgtcatttattattaatattgttattattattattattgatattaaGGAGTTGATTTCATCTCTTGAAGCTCAGCATGCATTTGTTCATTTAAGCAGTTTGCCGTCACGGAGATGGATAAGAGGCTCGAAGGGAGGAGATGGACGTTTGCTGGGTCACTGCTCTGCCTActcgtgtgcgtgtgtgcgctGAACCGCGCGCTCGCGCAGATCCGCTACTCGATTCCCGAGGAGCTGGAGCACGGCGCATTTGTTGGAAACATTGCCGAGGACTTGGGTTTGGATGTCGCCAAACTCTCTGCCAGGCGATTTCGGATCGTGTCTGGGGCGAGGAAGCAGTACTTGGAGGTGAACTTGGAGAATGGGATTTTATTCGTAAATGAGAAGATCGACCGTGAGGAGCTGTGCGAGCAGAGCCCGCTTTGTTTCTTGCACTTGCAGGTGGTAATCGAGAACCCACTGGAGCTGTACAGAGTGGAGGTCGAGGTTTTGGATGTTAATGATAACGCACCGAGCTTCCCCTGGAGTGAGTTCAACCTGGAGATCACCGAATCGGCAGCACctggctctcgctttcctctgGAGAGCGCGCAGGACCTAGACGTGGGTACGAACTCTTTGCGTTCGTACTTGCTGAGCGCGAACCGGCACTTCGCGCTGGACATTCAGACGCGCAACGACGGCAGCAAGTTTGCCGAGCTCGTGCTGGAGTCCGCGCTGGACCGCGAGCAGCAGAAGACGCACGAGATGGTGTTGACCGCCGTGGACGGCGGATCGCCGCTGCGCTCGGGCACAGCGCAGATTACTGTCACCGTACTGGACGCCAACGACAACGTTCCCGTCTTTGAACGGCCCGTATACCGCGTAAGTCTCGTGGAAAACGCGCCTCGCGGCACGCTCGTGCTCAAGCTCAACGCCACAGACGTAGACGAGGGTGCGAACGGTGAGATCGTATACTCTTTCAGCGGCCACGCGCCCTTGCGGGTGCGCGAGCTCTTCAGCGTGGACGCGCACACCGGGGAGATCCGCGTAAAAGGGGTGGTGGACTATGAGAAGTCTGCCGTACACGAGCTCTACGTGCAGGCAAAAGACAAGGGTCCGTCCGCTGTGGCCGTGCATTGCAAGGTGCTCGTGGACGTGCTGGACGTCAACGACAACGCGCCTGAGGTCATCCTCACGTCCGTATCCACACCTGTACAGGAGGACGCGCCACCAGGCACCGTGATAGCCGTAGTGAGTGTGACAGACAGGGACTCGGGGGAGAACGGAGCCGTGGACTGTCAGATACCGAGCAACGTACCGTTTCAGCTGCACTCCTCTTTCAAGAACTATTACACTCTCGTAACCAGCGACCTTTTGGACAGAGAATCCGTGGCTGAGTACAACATTACGCTGACGGCGCGCGACTCGGGCTTGCCACCACTCTCCATGAGCAAAACTCTGCTCGTGCAGGTTGCGGATATAAACGACAACGCACCCCGCTTCCTCCAGCCGTCATACACAGTGTACGTGACCGAAAACAATGCGCCGGGTGCATCCATCTGCTCGGTCACTGCTTTCGACCCCGACTCGAATCAGAACGCGTACCTGTCCTATTCCATTCTGGAGGGTCAGATTCAGGGCATGCCCGTGTCCACATATGTCTCCATCAACTCGGACAACGGCAACGTGTACGCGCTGCGTTCCTTCGACTATGAGAGGTTGCGCAACTTCCAGATCCGTGTGCGCGCGCAGGACGCGGGCTTCCCTCCGCTCAGTGGAAACGTGACCGTTAATGTATTTGTGCTGGACCAGAACGACAACGCTCCGGTCATTGTGTCGCCGCTGCCCACCAACGGCACGGCAGCTACCGAGGTGGTGCCGCGCTCGGTGGACGCAGGATACCTGGCGGCGAAAATCACAGCGCTGGACGCGGACGCCGGACAGAACTCGCGCCTCTCGTACCAAGTGCTGCACGCCACGGATCCCGGGCTTTTCAGCGTGGCGCTGTACACCGGTGAGATCAGAACTATCCGCCGTTTCGTGGAAAAAGACGCCGCGCGCCAAAGGCTCGTGGTTTTGGTCAGGGACAATGGACAGCCGCCGCTCTCGGCCACCGCCTCCATCGTGTTGTCCGTTGTGGACAGCGTGCCCGAGTCACCCTCCGAACTTGGCGACCCGTCGCGCGGCGCGCGCCCCCCCTCAAACCTTGCGCTCTACCTCATCGTTTCACTCAGTACCGTCTCACTCATCTTCCTCGTGGCCATCATTGTGCTGGCCGGCTTTAAGTGCTACAAAGACGGCGGGGACTCGCTCTCCTCTTTCGGCAGCGCTGCGTGCTGCACTTTCGAAGACGAGCCTCCTCCCACCGACGTGCTCAAAAAGTCCAACCTGAACGTGCAGCTCTCCACCGGTGCTAAAGTGCCCACGGGATGCGTAGAGGTGAACGGCGGCACCGGAGGAACAGGAACCGGAACAGCGCAGCAGCCGTACTGCTACAAAGTGTGTCTGACTCCAGAATCGACCAAGAGCGACTTCATGTTCCTGAAGCCGTGCAGTCCCGGGGGCGCGAGAAATAACGCTACAAGGAACCATGGACCAGCGGTGAATAACGGAGCTACGACTCCAAACGAGCTAAAGCAAGATAACACAGACTGGGCTCTCACCAAGAATCAAACTTCTTCTTTAAAAAGCTATAATTCCATTAACATGGATGGCACTCTGAGGAAGGCCATGCAGAATGATTCTGAAAACTATGTCAGTCCAATGGCTGCAGGACAGTATTGGACCTGGGGGActggaagagtgagagAGTATAGAATGTCTTCTCCAGCGCCAGGCCTACCGCAGCAACGGGCATGGACACCCCGCTACACTCCCACAAACAACCCCCAACCGCAGCAGCCTGCACCTCACCCTGGCCACCCTCCTCCCGACTACCAACACAATGTCTACATCCCTGGTACTCCCTCTGCCCTGTGCACTCTTCGACCAAGCCACCGCAGTGAGCTTGACGTTCACAACTCATTCTCCACCTTCGGCAAGAAGCGCAAGTTCATCTCTCCCAGCAGTTACGATCCTCGAGATGACACAGGGACTGAGGTCATCAATAATGACTTATATAATGAATGAAGAGAAGtaatagaaagagaaaatgtTACAAAGCCGAGATGTAATGATGCAAACAGTGTGGGGGAGCAAATATCCTAAGTTAAAAGAAAATGGcaaggaagaagaaaagagaagatcaGAGAGTTTCAATATGACCAAAGCAGAGCCTATATTTCTAAACCAAACTAGTCTCGTATTATAGAGGATTATGTTTCTGCTCTCTGTGGTCTGCTTCCCATGACTCTATTTGCTTCAgtaaccagaaaaaaacaccatttGGTTGATTTCTCTCACAGTTACGTGTTTGTGGCACATTAAATGAGGGGTCTCCATAAAGAGGCCTTAATAGCCAACACTGGCTCAAAGAACTGTCTCACCGTCAGACTCGCTGTCCACCCATCAGTCCATATTTGTTGTGTGAgtactgaaaaaagagaaagggggGAAAGAAAGTGAAGTAAATCTGTTTACATCACTCTGTGTTTCATGCCATTCGTAAAGTAAAGAAGGTTTAATATGGCTGCTGAAGAGGGTTTGTTAAGGCTAAAATGAGTTGGCGTATTCTTCTATGTAAATCATCAGAgaataaagttgtttttttactgtccTTCAGACCATGTGAATTGAGACCTTGTGTCATCatagttattttaaaattcattatgacagattgaacattgcatatttttacattgaaaatTCTGATTACTATAATGTTTTGCTACCATTGTTAATTTGACAATCACATAAGCCTAAATGTAAGCATTACATGGCCTTGGCACACAGTATGTATTTTCTGTTCTAGCAGAACAGTTTTAGCCTTGGATTGATTGGTTGCTTACTGAAACTGATGAGAAAGTCCAATGAGATTATTGTTCAgtgaacaataaaaacaatgttgATATGTATGCAAACTGGGTAAATGACTCTCACAGGTAAATTACTTCAGGCTAAGGCATACACTACTGTATACATTCtgagaataaaaatatttttttctgaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 16852 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 325265 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 371933 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 389723 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 408550 8401246 ~ 8401478 (+) True G72183
TU97464 lncRNA downstream 135822 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 270343 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 322829 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 407982 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 772774 9592307 ~ 9639931 (+) True G72305
XM_022672045.1 mRNA upstream 83393 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA upstream 83393 8691957 ~ 8726635 (+) True LOC103028966
XM_022672046.1 mRNA upstream 83393 8692321 ~ 8726635 (+) False LOC103028966
XM_022672044.1 mRNA upstream 122559 8674849 ~ 8687469 (+) True LOC103031395
XM_022672043.1 mRNA upstream 168680 8440137 ~ 8641348 (+) True spock1
XM_007228007.3 mRNA downstream 6981 8826514 ~ 8857516 (+) False LOC103031822
XM_007228005.3 mRNA downstream 6981 8826514 ~ 8857516 (+) False LOC103031822
XM_022672071.1 mRNA downstream 9928 8829461 ~ 8857516 (+) False LOC103031822
XM_022672068.1 mRNA downstream 9929 8829462 ~ 8857516 (+) False LOC103031822
XM_022672067.1 mRNA downstream 12992 8832525 ~ 8857516 (+) False LOC103031822
TU96877 other upstream 1924487 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2271234 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2772280 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2773154 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3304390 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 323366 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1259046 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3783819 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4051951 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5829296 14648829 ~ 14649551 (+) True G73533

Expression Profile