RNA id: XM_007228037.3


Basic Information

Item Value
RNA id XM_007228037.3
length 1922
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC103043406
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9791271 ~ 9799463 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGTCGCAGGGTGGCGCTGAGTGTCGGCGGTGTTCAGCAGGAGCGCAGAGCAGGAGTCCGGACGTTTCTACAGCCCGTGCTGTTTGTTTGAGTGCGTGTCGTGTCTGCCACTGATACTAAATCTACACCATGTCTTTGGAGATCGAGTCAGCAGAcgTAATCCGTCTGATCATGCAGTACTTAAAGGAAAATAACCTGCATCGCACACTGGCAACACTGCAGGAGGAGACCACCGTATCCCTCAACACAGTGGACAGTATTGAAAGTTTTGTGGCTGACATTAACAGCGGTCACTGGGACACTGTACTACAGGCTATCCAGTCCCTCAAGCTGCCAGACAAGACCCTGATTGATCTGTATGAACAGGTTGTGCTGGAGCTGATTGAGCTGAGAGAATTGGGAGCTGCCAGGTCTTTGCTGAGACAAACTGACCCCATGATTATGCTGAAACAGACTCAGCCTGAGAGGTACATTCACCTGGAGAACCTGCTGGCCCGCTCCTACTTCGACCCCAGAGAGGCTTACCCTGATGGCAGCAGTAAGGAAAAGCGCCGAGCAGCCATTGCCCAGGCGTTGGCTGGCGAGGTCAGTGTGGTGCCTCCTTCACGTCTCATGGCTCTGCTTGGACAGtCTCTGAAGTGGCAGCAGCACCAGGGTCTTCTGCCTCCTGGTATGACTATCGACTTGTTCAGAGGCAAAGCTGCAGTGAAGGATGTAGAGGAAGAGCGATTCCCCACCCAGCTGAGCAGACACATCAAGtttggTCAGAAGTCTCACGTGGAGTGCTCCCGCTTCTCTCCGGATGGTCAGTATTTGGTCACTGGCTCTGTTGATGGCTTCATTGAGGTGTGGAACTTCACCACAGGCAAGATCAGaaagGATCTGAAGTACCAGGCGCAGGATAATTTTATGATGATGGACGACGCTGTGCTGTGCATGTGTTTTAGCAGAGATACAGAGATGCTGGCTACAGGAGCTCAGGATGGCAAAATAAAGGTGTGGAAGATCCAGAGTGGTCAGTGTCTGCGCCGGTTTGAGCGTGCTCACAGTAAAGGTGTGACCTGTGTGAGCTTCTCCAAAGACAGCAGTCAACTTCTTTCAGCCTCGTTTGACCAAACAATCAGaGTTCATGGGCTAAAATCAGGCAAGTCTCTGAAGGAGTTCCGAGGCCACTCTTCATTCGTTAATGAAGCCACATTCACTCCTGATGGCCACCATATTATCAGTGCTTCTTCTGATGGCACGGTGAAGatttggAACGTGAAAACCACCGAGTGCACAAGCACATTTAAATCTCTCGGCGCCTCAGCTGGCACGGACATTACTGTGAACAACGTCATCCTCCTTCCCAAGAACCCAGAGCATTTTGTAGTCTGTAACCGCTCCAACACTGTGGTCATTATGAACATGCAGGGCCAGATTGTGAGGAGTTTCAGCTCTGGTAAGCGAGAGGGCTGCACACTTTCCCCCAGAGGAGAGTGGATCTACTGCGTGGGAGAGGACTTCGTGCTCTACTGCTTCAGCACAGTCACTGGCAAACTGGAGAGAACCTTGACAGTACACGAGAAGGATGTGATTGGTATTGCCCACCACCCTCATCAGAACTTGATCTCTACATATAGTGAAGATGGTCTTCTCAAGCTTTGGAAACCTTAAAACATTAGCCATGACCAGAATATTCCTAGGATAACtttgcaagttttttttgtagatatttttttatttgagtgacaggttgagttttctttttttcagtttgaaagcaaaaaaaaaatatcggGACAGGTGGACCTTTCCTCTCCAATGTTCTGTACCCTTGTCATTGTGATTGTTTAACAGCAAGTAATTGTCAATATTTTCaagtattttacataaaatgttttctttaacctttacaattaaaacatttttgatcacaaa

Function

GO: NA

KEGG:

id description
K13111 SMU1; WD40 repeat-containing protein SMU1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97793 lncRNA upstream 17672 9773199 ~ 9773599 (+) True G72514
TU97782 lncRNA upstream 69389 9720971 ~ 9721882 (+) True G72503
TU97779 lncRNA upstream 73356 9717673 ~ 9717915 (+) True G72500
TU97773 lncRNA upstream 81057 9708437 ~ 9710214 (+) True G72496
TU97761 lncRNA upstream 92273 9692669 ~ 9698998 (+) True G72488
TU97903 lncRNA downstream 169104 9968567 ~ 9970042 (+) False LOC103043718
TU97912 lncRNA downstream 178512 9977975 ~ 9978422 (+) True G72606
TU97918 lncRNA downstream 229020 10028483 ~ 10028846 (+) True G72612
TU97923 lncRNA downstream 258020 10057483 ~ 10057818 (+) True G72615
TU97925 lncRNA downstream 259222 10058685 ~ 10058886 (+) True G72617
XM_022672093.1 mRNA upstream 442844 9276546 ~ 9348427 (+) True pcgf3
XM_015608793.2 mRNA upstream 565712 9196453 ~ 9225559 (+) True LOC111188173
XM_015608812.2 mRNA upstream 596756 9187244 ~ 9194515 (+) True LOC107197946
XM_022672083.1 mRNA upstream 616372 9171322 ~ 9174899 (+) True LOC103034588
XM_022672084.1 mRNA upstream 628528 9158954 ~ 9162743 (+) True LOC111193086
XM_022672096.1 mRNA downstream 27824 9827287 ~ 9853057 (+) True tbc1d2
XM_022672099.1 mRNA downstream 110943 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA downstream 110943 9910406 ~ 9957528 (+) False LOC103044029
XM_022672102.1 mRNA downstream 110944 9910407 ~ 9957528 (+) False LOC103044029
XM_022672101.1 mRNA downstream 110944 9910407 ~ 9957528 (+) False LOC103044029
TU97487 other upstream 641852 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2905730 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3252477 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3753523 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3754397 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 279116 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2803889 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3072021 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4849366 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5092071 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile