RNA id: XM_007228043.3


Basic Information

Item Value
RNA id XM_007228043.3
length 2214
RNA type mRNA
GC content 0.45
exon number 9
gene id irf7
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10065416 ~ 10073101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCTCTACCAGGTCCACTTCCAGCCACGCCCCCGCGCTCCACCGCGCGCCTCCAGATAAATACTGCAGCTGCTGGAGAGGAGAAGTGAGTGAAGTGCAGCATGTTTATATGAGCCACCTGATCGAGAGAAGCACCGAAGAGAGCAGCAGCATGGCGAAGCCTCAGTTTGGTTCATGGCTATTAGAGCAAGTGCAGGCTGGAAGGTATGAGGGTCTTTACATGACTGGCACAGACACTTTCCGCATCCCTTGGAAGCACAACTCTAGAAAAGACTGCGGCAATGAGGACAACAGAATATTTAGAGAGTGGGCTGTGGTTAGTGGCAAAATCTCTGATTATCCCAACGATAAGGCCAAGTGGAAGACCAACTTCCGCTGTGCTCTCAACAGCCTCAAGCACTTTAAGATGGTGGAGGATCACTCCAAAGACTACCACGATGACCCCCACAAAATCTACCGCATCGTTCGCCCTGAAAACATCCACAATGAGGAGATGTACAAGACAGAAGACATCCCAATGGagCGTGAGGATTTGCCATTTAACCTGGACACTCTGCATCTCGATTATTCTGaTTACCAGCAATGGGGAAACTATTCGCAGCCTATAGCAGATCAAGGCAACTACTTTGCAAATCCTGTGCCGGAAGTTATTCTGCAACCTTGTCCGCAGAGTAACATTCCAGCTCCAGTACCTGctctactaccaccaccacaacAACACTACGCTGCAGTGCCTCCATTTGAGAACCTGCCCTTTCCATTCGAGCTGGAGATCTCCATTCACTACAGGGGAGCCGAGAAGCTGAAGGTCCAGAGCTCAGCTCAGTCTGTTCAACTCCACTACCACTGCGATCCGTCTCAGCTGAGTGGCCAGTCCATCCTTTTCCCCTGCACTGAAGGCCTTACGGACCAGATACAGGTCGAGTACACCAAGCGCCTCCTGGACAGCATCCAGAGGGGCCTGCTGCTGGAGGTGTGCCCAACAGGAATCTATGGCCTCCGCCAAGACAAGTGCAATGTGTTTTTTAGCACCAGAGATCCTGCCGAGATTCAGAACCCAGAGCCCAAAAAGCTGCCCCAGAACTGCAAGGAACTTCTGTTTAGCTTCGAAAAGTACACCAAAGATCTCATGGATTTCCAAAGCCACCAGCGTGGATCGCCTGACTACACGATCTATTTGTGCTTCGGGGAGAAATTCCCTGATGGAAAGGCCCTGGAGAAAAAACTGATAATCGTAAAGGTTGTGCCTCTGATCTGCCGTGAGCTTCACAAGAGAGCGCAGATGGAGGGAGCATCATCTCTGCATAACGACAACATCAGCCTGCAGATCTCCTACAGCCTGTTCGAACTCATTGAGTCCACCTTCCTTCTACCCACATTTGACTGAAGTTTCACTATTTAAAACACTTCAAACAAGTTTCTCTCCATTCTTCTTAACACTTACTCTTACACAGTCTGTCTGGACTTAAGATTTTCAGATAATAAATGTGTCTTAAATGTAACTCTTCCCATAGTAGAACTAGTAAACATAGTAAAAATGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCAGCTTCTGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACTGGGACGGTTGTGAGACAGGAGTCTCTACCTTTCCTGCTTCAAGTTTAACCAGTTTCGATATAAGTTCTCAGTAAAACAACTTGAAGTAATTAGTTCTCCAAACTGGAAAACACCCCAAGCCCCAGCTTCAGGCAGGACCAGTATGTTGACAATTTAAAGTTTACATCTTGTAATGTTCcattacattttttcttttaaagccaAGTCTTCCCACTCACTTCATTAATGAGGCAGTAACCTCATTTTGGTATTTATATCTTCTAATGAAGAATTCCCCTTGCTCTGCACTTGTAAGGGCTGATCTTGTAATACTTTCTTGtctgttattttaaattattctttGTTTAGCTTGGTATGTTGAAAACTGAAAGGTTGTATCTGTTTTTGTATGAACctgagaataaataaatatatacatatacaaaaacacactgtaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97925 lncRNA upstream 6530 10058685 ~ 10058886 (+) True G72617
TU97923 lncRNA upstream 7598 10057483 ~ 10057818 (+) True G72615
TU97918 lncRNA upstream 36570 10028483 ~ 10028846 (+) True G72612
TU97912 lncRNA upstream 86994 9977975 ~ 9978422 (+) True G72606
TU97903 lncRNA upstream 95374 9968567 ~ 9970042 (+) False LOC103043718
XR_002650238.1 lncRNA downstream 24158 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA downstream 24176 10097277 ~ 10099144 (+) False LOC111193092
TU98085 lncRNA downstream 498111 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA downstream 498194 10571295 ~ 10626964 (+) False LOC103022150
TU98124 lncRNA downstream 724891 10797992 ~ 10798845 (+) True G72752
XM_007228041.3 mRNA upstream 87592 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA upstream 87592 9976375 ~ 9977824 (+) False thg1l
XM_007228038.3 mRNA upstream 95374 9968506 ~ 9970042 (+) True LOC103043718
XM_022672100.1 mRNA upstream 107888 9910406 ~ 9957528 (+) False LOC103044029
XM_007228055.3 mRNA downstream 112636 10185737 ~ 10206122 (+) True hras
XM_007228054.3 mRNA downstream 134608 10207709 ~ 10212496 (+) True LOC103047796
XM_007228053.3 mRNA downstream 139462 10212563 ~ 10221827 (+) True tsg101
XM_022671910.1 mRNA downstream 199818 10272919 ~ 10626963 (+) True LOC103022150
XM_022672116.1 mRNA downstream 902620 10975721 ~ 11000591 (+) True igsf22
TU97487 other upstream 915997 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3179875 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3526622 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4027668 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 4028542 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 5478 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2530251 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2798383 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4575728 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4818433 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile