RNA id: XM_007228053.3


Basic Information

Item Value
RNA id XM_007228053.3
length 2592
RNA type mRNA
GC content 0.43
exon number 10
gene id tsg101
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10212563 ~ 10221827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTAGCGACGGAAAGAGGTCGATCTGTCCATTTTGGCAGAGTGCACTTGCTTTATTTACCTTTCCTGATGAGCTAGCTGTACTCTGAGTTTAGTGTAAGTGTCAGGAATAGATCTGAAACGGCTTTAACTCGAGCTGTGTGGAGTATCAGTCCGGTATCCGTCGTGTGCTCGGGTTAAAGCCCGGGTTTAGGGGAGTTTATCGGGGGGACCGTCTCCTGGCCCTGGCTGAGTTTAGCCGGGGACCAGGCCAGCGCTGCGGAACTAGCTGGGCAACCATTACAGCTCCATACACCCGTTATTAATAAAAGCCGGGATTAActaaattacagtttatttattgaAGACTGTGAGAGAGTTTAGGGGCTCAGCTATGGCGGTTGTCAACGAAGGCGCGCTTAAAAAGATGCTGAAGCAATATAAATACCGTGACCTCACTGTACGTGAGATAACGAATGTCATCCTGCAATACAAAGATCTGAAACCTCTGATGGATGCTTATGTGTTCAATGATGGATCGTCAAGGGAGTTGATGAGTTTAACAGGGACAGTGCCAGTAAGCTATAGAGGAAATGTGTATAATATCCCTGTGTGTCTATGGCTGTTGGACACATATCCCTACAACCCTCCCATATGTTTTGTGAAACCTACCAGCGCAATGATGATCAAGACTGGGAAACATATTGATGCCAATGGCAAGATTTACCTTCCCTATCTCCATGAATGGAAACATCCGCAGTCTGACCTGTATGGTCTGATCCAGGTCATGATTGTTGTTTTTGGAGAGGAGCCTCCTGTTTTCTCACGACCCACAACTCAGCCCCCCTATCAGTCCTTCCAGGCCACTGGGCCCCCAAATCAATCTTACATGCCTGGAATGCCTGCTGTGTCTGGTTATGGACCAAACCCAAATCCATgTGGGTATCCAGGCTATCCTTATCCTGGAGGGTCTACATATCCTGCTTCTGGGGGCCCTACACACTACCCGTCCCAGCCTCCAGTCACTACTGTGGGGCAGAGTCGAGATGGCACCATCGGAGAGGACACTATCCGTGCCTCGCTCATCTCGGCTGTGAGCGATAAACTCCGCTGGAGGATGAAGGAGGAGATGGATAGGGCTCAGGCTGAGCTGGATGCTCTCAAGCGTACAGAGGAGGACCTGAAGAAAGGCCACCAAAAGCTGGAGGAGATGGTCTCTCGTCTGGACCAGGAAGTGgCTGAGGTGGACAGGAATATTGACCTGCTCAAGAAGAAGGATGAGGAACTGACAGAAGCTCTGGAGAAGATGGAGAATCAGTCAGAGAACAATGATATTGATGACGTAATTGTTCCCACAGCGCCGCTCTATAAACAGATCCTGAATCTGTATGCTGAGGAGAATGCCATTGAGGACACCATATTCTACCTTGGGGAGGCTCTACGCAGAGGCGTCATCGACTTGGAGGTCTTTCTCAAGCATGTGCGACTGCTGTCCCGTAAGCAGTTCCAGCTGAGAGCACTGATGCAGAAAGCCCGAAAGACTGCCGGACTCAGCGACCTCTACTGATCCCACTGCCACCTGATCCCCCAccttgttttatgttttctttccCTTACTATGTTTTACATAGTTGTCAACAGCTTCCCTTATAAACTGATGCCTACTTATATCCTTTGGATTCTGGCAAATATAGCATAACATTGATGAATCCTTCAAGTTATCTATGTTGAAATcagataaaattttaaaatcagaAATGAAGCACAACAGTGATTGACTGACTGTTTAACTGGCTGACCAACTAGGGACAAAGTCACAGGGGTGACTTTCTGTTTCTTCATGCATgtaatgcacattttttttctgtcttagAGCTTCTTTACATCTTCATCTTTTGGTTATTATATCAAAATGTGTCAGATttgttgattgttttttttttgcagtactgACTCCAAAATGTAGCAAATGACAAACTGCTGAATGACTGCTCCACACtccttacatttttgtttttgggacaagaaaatacttatttaattttagaaaggaACTCTTTAATGCAATGTGAGCTTTTGTATCTCAgcgattttattttactgtttctgaCTGAGTATTTATGTTTTTCAACTGTGCTGTCCTGGGGTCGACCTGCTGCGTCCTGTTCCTGAATTGTTGCTATAATTGTACAACTGTCGTTCATGTAGctatttaaactgaattattcGTCTGACATTTCAAGTGTTACAAATTTAGAACGGTTCCAGAGCATTTGCACTCAAATTTCTGAGTGAGAAATTGTGTGTACGTGTAggcatgtatgtgtgtacaaGTATTCATACAGGTCTGCTTAGTTTGACTGACTCCAGCATCAACAATGGAATGAAgatttctttattaattcattcaaaaaggttttaaatgacttttgacaaaataatagagaaaaaaaaatctatgtgtgttttttttttttttagtgcgtTTTGGGTGggcaactttattttatttgattgagaAGATCCTATTACAAAGATTCTTCTTACTTTTTCCTTCTTGTTTTCAGATCTTTAGTTGTTAATATCTTCTGCTCAATAAAATCAGGATAATTTGG

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0015031 protein transport biological_process

KEGG:

id description
K12183 TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650238.1 lncRNA upstream 113418 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA upstream 113419 10097277 ~ 10099144 (+) False LOC111193092
TU97925 lncRNA upstream 153677 10058685 ~ 10058886 (+) True G72617
TU97923 lncRNA upstream 154745 10057483 ~ 10057818 (+) True G72615
TU97918 lncRNA upstream 183717 10028483 ~ 10028846 (+) True G72612
TU98085 lncRNA downstream 349385 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA downstream 349468 10571295 ~ 10626964 (+) False LOC103022150
TU98124 lncRNA downstream 576165 10797992 ~ 10798845 (+) True G72752
TU98125 lncRNA downstream 577719 10799546 ~ 10801772 (+) True G72753
TU98148 lncRNA downstream 786722 11008549 ~ 11015607 (+) True G72766
XM_007228054.3 mRNA upstream 67 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 6441 10185737 ~ 10206122 (+) True hras
XM_007228043.3 mRNA upstream 139462 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA upstream 139462 10065417 ~ 10073101 (+) False irf7
XM_007228041.3 mRNA upstream 234739 9974224 ~ 9977824 (+) True thg1l
XM_022671910.1 mRNA downstream 51092 10272919 ~ 10626963 (+) True LOC103022150
XM_022672116.1 mRNA downstream 753894 10975721 ~ 11000591 (+) True igsf22
XM_022672118.1 mRNA downstream 807659 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 807660 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA downstream 807660 11029487 ~ 11034828 (+) False spty2d1
TU97933 other upstream 130423 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1063144 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3327022 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3673769 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4174815 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 2381525 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2649657 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4427002 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4669707 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 6064849 16286676 ~ 16288329 (+) True G74169

Expression Profile