RNA id: XM_007228054.3


Basic Information

Item Value
RNA id XM_007228054.3
length 1216
RNA type mRNA
GC content 0.36
exon number 6
gene id LOC103047796
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10207709 ~ 10212496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCAATAACTGCcgcagagaaaaacacacagcactTATTCTGCAGGAGAGATTTCCAGAGATTCAGTTTGTTTAATCTGTTTTGGATTGAAATCATGACGGTCACTAGTATAGGGTCTGTGAAGAAAGTGCTACCCAAGACATACCATCACAGGAAAAGGCTGCTATCAGAGGTCATGGTGGTCATGTCCCGTTACAAGTACCTAGAACCAGTAATGGACAGATTTGTTTTCAACAATGGCACCGCCAAGGATCTGCTAAGCCTGGTGGGGACAGTAACAGTgttgtaccaggGGAGACTTTATAACATCCCCCTGTGCCTCTGGCTGGATGAAAGCTTTCCCCGCACCGCTCCAATCTGCTTTGTGAAACCCACAAAAGAGATGATGATCGTTCCCAGCACTCACGTGAACAGCGACGGGCAGATCATGCTACCGTATCTGGAAGAATGGAGACATAGTCAGTGTGACCTTCACAGCCTAATTCAGGTGCTGATGTCCATCTTTGGTGAGGCACCTCCTCTGGTTATGCGGCCAGTTTCAGAAGAAGAGCCTATGAAACATTTTCACGCCTGCTCAGTGGAAAACAACTGTTCCCATATGACAGTGTGGAGAGAGGATGGATTACCTTTCCAAGGCAAAAATGAAACTATCTGCTAAATGTACAAACTGTAttcatattttgtatttaccTGTATATATTGATAgatgaatatgtttatataaaggtgttgtattatattttaaatacacaatATAATCGAATTTGATTGTCCTGTTTATTCTCAtgatgtgaaaataaataaactgtaataaaactttatgaaagagttaaaacctttttaaccttctttcaatgaaaaatgtcaatgtttattttaggtaTTTTTGGAGAATTTAATATTCTATATCAATTTATCAAGAAAATATGACacagtatgtttaaattatgtagtaaacataaTTCAACAAAACTAAAGATGCttattttcattggacagtgacgatatgctgTATTTATcgactgttttcttttttttaaactaaagtaTGTAACTTAATTGTCACATGTAATGCAACAGCCAGTGTTGAAGCTCCTAGTTATTAATGTACTCAATAGCtggaataaattaatgaatgctTTATATGCTTCTAACACaatataccttttttatttttttattttttcattattaaaggtTTGGctttcaaaata

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650238.1 lncRNA upstream 108564 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA upstream 108565 10097277 ~ 10099144 (+) False LOC111193092
TU97925 lncRNA upstream 148823 10058685 ~ 10058886 (+) True G72617
TU97923 lncRNA upstream 149891 10057483 ~ 10057818 (+) True G72615
TU97918 lncRNA upstream 178863 10028483 ~ 10028846 (+) True G72612
TU98085 lncRNA downstream 358716 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA downstream 358799 10571295 ~ 10626964 (+) False LOC103022150
TU98124 lncRNA downstream 585496 10797992 ~ 10798845 (+) True G72752
TU98125 lncRNA downstream 587050 10799546 ~ 10801772 (+) True G72753
TU98148 lncRNA downstream 796053 11008549 ~ 11015607 (+) True G72766
XM_007228055.3 mRNA upstream 1587 10185737 ~ 10206122 (+) True hras
XM_007228043.3 mRNA upstream 134608 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA upstream 134608 10065417 ~ 10073101 (+) False irf7
XM_007228041.3 mRNA upstream 229885 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA upstream 229885 9976375 ~ 9977824 (+) False thg1l
XM_007228053.3 mRNA downstream 67 10212563 ~ 10221827 (+) True tsg101
XM_022671910.1 mRNA downstream 60423 10272919 ~ 10626963 (+) True LOC103022150
XM_022672116.1 mRNA downstream 763225 10975721 ~ 11000591 (+) True igsf22
XM_022672118.1 mRNA downstream 816990 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 816991 11029487 ~ 11034828 (+) True spty2d1
TU97933 other upstream 125569 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1058290 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3322168 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3668915 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4169961 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 2390856 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2658988 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4436333 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4679038 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 6074180 16286676 ~ 16288329 (+) True G74169

Expression Profile