RNA id: XM_007228059.3


Basic Information

Item Value
RNA id XM_007228059.3
length 2071
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC103022764
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11037500 ~ 11048398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGCTGGTGGAGTGTTGATGTGAGCGTTTGCGGAAGCTGAGGGAGCTGTCAGGAGGCTGAGCTGAAGAGTTAGTGTTAAACATGGAGCTGAACTCAGAGCCGCTCAAAAAGATCCTGTCTAAGtataaatttcGAGATGTTGCCATTGAGGAGCTTCAGAAACTTAACCGTGTTTATCCTGACATGAAACTGAAGACTGGTTCTTACACGTTTAGTGACAGCACTCAAAGGGACCTGCTAAACCTGGTTGGCAACATCCCAGTCAAATACAAggGACACTCTTACAACTTGCCCATCCAGTTATGGCTGTTGGATTCATTCCCCTTCACACCACCCATTTGCTTTCTACGGCCCACTTCCAACATGATGATCAGAGAGGGCAAACATGTGGATGCCAAAGGCAGAATCTACCTGCCTGGCCTACACAACTGGGACCATCCAAAATCATCTGTAAGTGTGCTCTTGGAGGAGATGATTGCTAAGTTTGAAGAGGATCCTCCATTAGGCATGAAGTCTACAGGAGATGGAAAAGATCCCAATGAGCTGCTCGCTTGTGTGTCGCATCTAAACATCACTGAAGGGGGAAATCGACCTGATAAGGGTGTGAATAAAGTCTCTGTGATAGGAGGAGGAGACCTGGGGATGGCTGCTGTGTTGAGTATCATggcaaaaAGCCCTGTGGACAAACTGGTTTTGATTGACATACCAGAAAGTTCAACCAAGGGTGGTACAATGGACCTAGAGATCTTCAGTTTGCCAAATGTGGAAGTTTCAAAAGACCTGTCAGCCTCAGCAGGTTCcaaggtggtggtggtgactGCAAACGCTTGGAGTGAGGAGCAGTCGTATGCAAGTGTGGTGCAGACAAATGTAGATATGTACAGCCGCATCATCCCGAGCCTGGCCCGCCTCAGCCCCACGGCAGTGCTGCTCATCGTTTCCCAGCCTGTGGATATAATGACGCATGTGGCTTGGAGGCAGAGTTGTCTGCCGCCAACACACGTGATTGGTGCAGGCTGTAACCTGGAATCAGAGAGACTCTCTTATGTCCTCAACATTGCTCTACTGGCCAACAAATCCGACAAACAGGCCTGGGTCATAGGAGAGGTGTCCGACAACAAGGTTGCTGTATGGGGGAGTTCAGGAACAAGTGTGGACAAACATCAAGTGCTGGCTCCAGTGACCAGCTCCACAAAGCCACTAATAGAGAGGGGGCTGGAGATGTTGAAAGGgagaggtcagaggtcatgGTCAGTGGGACTGTCCATCGCTGATATCACTCACAGCGTTCTCACTGATCAAAGGAAAACACACTCCATCACCACGCTGGCTCAGggatgGGGTGGAATTGGTTCGGAGGTGTTCCTCAGCTTACCTTGTGTGCTGGGAGCGAACGGATCTACCCGCCTGGCAGGAGTGGCTCTTACACCAGAAGATGACGCCAAACTGAGGGAGAGCGTCACATCTCTAAGCAACTTCTTCACGCAATTGAGAATATAGCTACAAAAACCCCTCTGAGACACCAGCGCTGCTGCAGTGCAGTAACCAAACAATCATCATATGTTTAGAGGGATTCATGAAAATAACCTCATTCAGTCCCACAGCCTCTGGCTGAGTTCAATACTATAAAATTGCAATCTTAGACTGCATGGTGCCTTCTGATAAAACAAACCTTTGCCAGCATGTAAAGTAGGCGACCACAAAGATTGTGTGTAGCCTTGTGCTGTCTGAATGCACTGCATTACCAAAGGTGacacatacacaaataaacattcCATAACCCAGTGTTTACCCACCTTGGTTCTTAAGGCACCCTGCCCTGCGCATTTTATATGGATACCCTGCTTCTGATTCCTCTGCAACTCAGGAAAAAGGTTTTGCAACTCAGGAGGGCTTGTGAATGTGAGAGCtggaaaaacactaaaatgtgcagagcagGGTGCCTCCAGGACTGAAGAATACTGATATAAACTGAATAGACATTAGTGTCATCACTCAGagagctttatatatattttccatctAATAAATTAAAGTTGCTTCAAATGGTCCTTTGAGCAATGCCAAAG

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0015031 protein transport biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98148 lncRNA upstream 21893 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA upstream 21893 11008816 ~ 11015607 (+) False G72766
TU98125 lncRNA upstream 235728 10799546 ~ 10801772 (+) True G72753
TU98124 lncRNA upstream 238655 10797992 ~ 10798845 (+) True G72752
TU98086 lncRNA upstream 410536 10571295 ~ 10626964 (+) False LOC103022150
TU98268 lncRNA downstream 136268 11184666 ~ 11184981 (+) True G72871
TU98272 lncRNA downstream 174376 11222774 ~ 11223004 (+) True G72875
TU98277 lncRNA downstream 176396 11224794 ~ 11226186 (+) True G72876
TU98274 lncRNA downstream 176453 11224851 ~ 11225928 (+) False G72876
TU98287 lncRNA downstream 472614 11521012 ~ 11522661 (+) True G72882
XM_022672118.1 mRNA upstream 2672 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA upstream 2672 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA upstream 2672 11029487 ~ 11034828 (+) False spty2d1
XM_022672117.1 mRNA upstream 2672 11029487 ~ 11034828 (+) False spty2d1
XM_022672116.1 mRNA upstream 36909 10975721 ~ 11000591 (+) True igsf22
XM_007228063.3 mRNA downstream 57256 11105654 ~ 11116630 (+) True th
XM_007228064.3 mRNA downstream 74781 11123179 ~ 11132277 (+) True LOC103024122
XM_007228082.3 mRNA downstream 514934 11563332 ~ 11634593 (+) True LOC103028645
XM_022672122.1 mRNA downstream 524926 11573324 ~ 11634593 (+) False LOC103028645
XM_022672121.1 mRNA downstream 524926 11573324 ~ 11634593 (+) False LOC103028645
TU97933 other upstream 955360 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1888081 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4151959 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4498706 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4999752 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1554954 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1823086 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3600431 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3843136 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5238278 16286676 ~ 16288329 (+) True G74169

Expression Profile