RNA id: XM_007228060.3


Basic Information

Item Value
RNA id XM_007228060.3
length 2990
RNA type mRNA
GC content 0.46
exon number 6
gene id spty2d1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11029486 ~ 11034828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGATGACGCGACGCTTCACAGCGCAGGAGTGAGGTGGACAGATAAGAAGTAGACGTGtttgttttctccctctctcggttattttctacattatctaAACCAGCTGAAGGAATTAGAGATAGTTAATCGACATACGGACTAAATATGTCCACAGACAGCTAAGATAGCGAGTTTTTGTACAGATTCGGCTGGACTGTCATCGGGTTAACCTGTGGATCGACTCACTTGGGTTAggctagcttgttagctagcgttaggttagctagcgttagcttgctgTAGCTCGCTATGCTTCTCCGAGCGGCTGTAGGAGCTCGTTTCTCGTCTAGAACAGACTAATAGGACTCACAGAAGCTCATTTTAGCACATGTTGTTAAAATGCTGTCGTGTGGGTTCGGTTTAAGAAGCTGAGCGGCTCGTTTGTGCCATTTGTAAAAAGCTACGAGCGACTGTCGTGCTCTGGTTAGCTAGTGCTAGTGCTAACTAACCCAACAGACTAGCAGCAGTTAAGCTAAATCTCTGGTTTAGAGGATCCTGGTGATCAGCTCCACATCTGCCAGCATGGATTTCCACAGAGTGCTGTCCATGGCTTCTGAAAAGCAGAGCGGTAGCAATGCACAGAAGAGGTATAGCTTGACACCTGGCCCACCCAAAAAAGACCCCAAGGTGAAAGGTGTCAATTCAGCTGCAGTGCAGGCGTTTCTAAAAAAGCAAGAAACTGAACATAAAAAGAAAGaactgctgaaaaaaaaggagaaagaagaaCTTTTAGCTAAAAGAGTGGAACTGAAATCTGACAGAAAGGCCCGCGCCATGGCATCGCGCACCAAGGACAACTTCAGAGGCTACAATGGCATACCTGTTGTGGAACAGCCCAAGAAGAGGCGGTCCAAGGGAGAACCGGGTGATCAAATTCAGGACACCAGTGATGTTTATGATGATGAGGACGATTATGAATATGCAGAAACTGACTCAGAATCAGAGCCAGAACCCACACCGGTAAGGCCTCAACCCCGCAGTGATGGTCCAAGCAAAATGAGCCATTCACAGAAAAAACCTAGTGCTCCACCTAAAGGTTCTCGACCCCCAATGAACTTTGCAGATCTTTTAAGACTTGCAGAGAAAAAACAGTTTGAACCTGTCGAGTTAAAACCTGTGACTAAGAAACCTGAGGGGAGGCTTCGCACTGCAGATGAAATTAGGGAGTTGGAACTTGAGCGCAAGGTTAAGAAACAAGACAGAGGGAAAGACAGTAAAGGTGACAGAAGTTCAGGGCAAAAAGAAAGCAAACCCACCTCAAACTCCCACAAGAAAAATGGGCATGACAGGGACATTAGGGAAGGCAAGCCACATAAGTCTTCAGGTGAAAAACAACCCAGTGGAGTTAGCAAAGCACCAAAGCAAAACATGCCAAGTGAGCGGCCGCACAGTTCTGCCAAGTTATCTAATGCAAATGGGTCCAAACATAGTTCTAGCTCCTCAGGTGCCTTAAGTGGTAAAACTGCCATAAAAGGTGGTGGCCCAGTCTCAAGCAAGCAAGCAGTACCCAGGCCTCAATCAGGCCAAAAGACTAGCCCCTCAAGTGACCTTACCTCGAAGAAGGGTTATCCTGGATTACCTCAAAAAAGATCAAGTGGTTCTGGAAGCAGACATGGAGCTGACTCGAACCCATCTAGACCGCCAGGCCATGGGCAGGGCATCAAAGGATCTGGCCAGGTCAGACCCGGACAGAGTATGTCAAGCAAGGGAGGACCTCCTCAAAAGCCTGGAAAGGGAGAAGTGCCGCGATCTGGGGGTGCCCCCACTCCTCGACCAGGTAACAATGGACCTATGAGATCTGCACCTGGTGGCCCCTCAAAGCAAGCAGGTACACAGCAACCGAGACCTGGAGGTAGTCAGCAGAGTCGTCCGGTGCCTGGAGGAGCAAGACCCTCTGCAAATGGACCTAGTAGGTCTGGTGGTGGTGTGCCTGCACGACCATCAAACAGCATGGGCCAAGGACCTGGAAGACCCCAGTGTACTGGTGTGCCTGCACGACCATCAAACAGCATGGGCCAAGGACCTGGAAGACCCCAGTGTACTGGTGTGCCTGCACGACCATCAAACAGCATGGGCCAAGGACCTGGAAGAACCCAGTGTACTGTTGTGTCAGAGACAATTTCATCTAAGAACTTTGCACCCAAACCAGGAATGGCTCCAAGGCCTTCGGCTCCCCAAGGACCCAAAACAGTGATAGGACCAACAGGCCATAGAATTCTGGTCAGACCAAATGGAGTAGCTCTACCACCAATAACCTCCAGCTACAAGCGGAAGtatgaagatgaagaagaagaatatgACTCTGAGATGGACGACTTCATTGACGATGAAGGAGAAGAGCAAGATGAAATTTCTAAGCATATCAGGGAAATCTTTGGCTATGATCGAACCAGATACAAAGATGAGAGCGACTATGCGTTAAAGTATATGGAAAGCAGTTGGAAGGAACAGCAGAAGGAGGAGGCAAGAAGTTTACGCATGGGTATCAAGGAAGATGAGGAGGACATGCgtatggaggaggaggagatgaaaagaaaacaagcaatgaaagcaaaacagagaaagaatTGATGTGTGGTTTTTGATGGACTGGCATTGTGTGAAGATTCAGGGTTTGAAATTTCCTTGTGCCACTGTGCAATTAATGTTACGTTATTTATTTCAGATATGCACTATCAAGAGATCATCTCTCATAGCTGAGCTGTAGAGAAAGTACAATATAATAATGAGTCactaacatttttatatccatGATGATGAAATTATGTGGGCTGCCTTGGAATACAAAGCGACAACTTTCAttacttcattatttcattatttgttcaGAATGTCACACAGATTGGGAGTCTTATTTTACTACTTGTAATATTCAATTGCTGACTGAAATGAGAAGCTGCAATTTTGcaatgtattttcattttttcttgttaAAGTGTTTTGACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98148 lncRNA upstream 13880 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA upstream 13880 11008816 ~ 11015607 (+) False G72766
TU98125 lncRNA upstream 227715 10799546 ~ 10801772 (+) True G72753
TU98124 lncRNA upstream 230642 10797992 ~ 10798845 (+) True G72752
TU98086 lncRNA upstream 402523 10571295 ~ 10626964 (+) False LOC103022150
TU98268 lncRNA downstream 149838 11184666 ~ 11184981 (+) True G72871
TU98272 lncRNA downstream 187946 11222774 ~ 11223004 (+) True G72875
TU98277 lncRNA downstream 189966 11224794 ~ 11226186 (+) True G72876
TU98274 lncRNA downstream 190023 11224851 ~ 11225928 (+) False G72876
TU98287 lncRNA downstream 486184 11521012 ~ 11522661 (+) True G72882
XM_022672116.1 mRNA upstream 28896 10975721 ~ 11000591 (+) True igsf22
XM_022671910.1 mRNA upstream 402524 10272919 ~ 10626963 (+) True LOC103022150
XM_007228053.3 mRNA upstream 807660 10212563 ~ 10221827 (+) True tsg101
XM_007228054.3 mRNA upstream 816991 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 823365 10185737 ~ 10206122 (+) True hras
XM_007228059.3 mRNA downstream 2672 11037500 ~ 11048398 (+) True LOC103022764
XM_007228063.3 mRNA downstream 70826 11105654 ~ 11116630 (+) True th
XM_007228064.3 mRNA downstream 88351 11123179 ~ 11132277 (+) True LOC103024122
XM_007228082.3 mRNA downstream 528504 11563332 ~ 11634593 (+) True LOC103028645
XM_022672122.1 mRNA downstream 538496 11573324 ~ 11634593 (+) False LOC103028645
TU97933 other upstream 947347 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1880068 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4143946 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4490693 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4991739 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1568524 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1836656 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3614001 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3856706 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5251848 16286676 ~ 16288329 (+) True G74169

Expression Profile