RNA id: XM_022672122.1


Basic Information

Item Value
RNA id XM_022672122.1
length 4457
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC103028645
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11563332 ~ 11634593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGCAGAAGCAGCGCCATTATTCGCGTGCAGCGGCAGCCCTGCGTGTCCCGGCGGCTCCAGCTGCCCAGGCGCACCGCAGGGGGGCTCGTGAGCACACTGATCAGACAAGCAGAGGGGCTGGAGGCACTCGAGCTGGCTGTTAGCCAAGGTGAGGATGCGCCAGGATGCAGGGCAGGCATGTAGAGACTACATTGGCTTACAGCATGGCAGCCGTGAGGTCAGTCCctaagctgctgctgctgcggtgATCTGACCAGCCTGCCGTTCCCCCAGCCACACCTCTGCCCCGGTCCTCGTCAGGGCGAGTGAGCCCCATCCGGAGCTGCGCTGCCTGGGCTCCGCAGCACCTCCATGGCGGGGGAGAAGGGCCGTCGCAGTGTCATGGACATCAAGCGTTTGGCCGGGCTGCTGCAGCGCGGGGCCGGCCGCCTGCTGGTCATCGACAGCCGCACCTTTTCCGAGTACAACGCCTCCCACGTGCACGGCGCCGTCAATGTCTGCTGCTCCAAGCTGGTGAAGAGGAGACTGCAGCAGGATAAGGTGTCGGTTACCGAGCTCCTGCAGCCCAATGGCAAGGTCAAGgtgGATCTGGGCAGGAGACAGGAGGTGGTGGTCTATGACCAGAGCACTAAGGACGCTGGTCAGCTTTCCAAAGATGGCTTTGTCCACATTCTTCTGAGCAAGCTGGATGGAACGTTCCACAAAGTGTCTCTGCTGACAGGCGGCTTTGCAGCATTTTCCTCCTGCTTCCCGGGTCTGTGTGAGGGGAAGCCAGTGGCCACTTTGCCCATGAGCCTGTCCCAGCCCTGCCTGCCAGTGGCTAATGTGGGCCCCACGCGCATTCTGCCCCATCTCTACCTGGGCTCGCAGAAAGATGTGCTCAACAAGGACCTGATGACCCAGAATGGCATCACGTATGTGCTTAATGCCAGTAACACATGTCCTAAGCCAGAGTTCATCTCCGAGAGCCACTTCATGCGCATTCCTGTCAATGACAACTACTGTGAAAAGCTCCTGCCCTGGCTAGAGAAGACTAACGAGTTTATCGACAAAGCCAAGGTTTCCAACAGCCGAGTCATTGTCCATTGTTTGGCGGGCATCTCCAGGTCTGCCACCATCGCCATTGCTTACATCATGAAGACAATGGGCTTGTCATCAGATGACGCGTACAGGTTTGTTAAAGACCGCCGGCCTTCAATATCACCCAACTTTAACTTCTTGGGTCAGCTGCTGGAGTTTGAGAAGGGCCTTCGTCTGCTGAAGGCACTCTCTTCGGGTCATGAGAAGAACGAGCAGTCTGGCGAAGCAGCAGAACCCAGAAAAGATGCTGCTTCGAAGCCCAAGGACGCTCGAAAGGATGGGGAGACTGAGACCTCATCAGAGTCCGAGGCAAAGCTGCCATCCCCTACGTCACTCCAGCAGGGCTTCAACGGTCTCAACTTGTCGGCCGAGCGCATCCTGGACACTAACCGGCTCAAGCGCTCCTTTTCACTGGACATCAAGTCCGTCTACACACCTGGCCAGTGTCCACGAATCACGCCCGTCCACGCAGAGGACGTCCCAAAGCTCTGCAAGCTGGATAGCCCAAGTGCCAGAACAACGAACGGTATTTGCCATTTATCCTCGGCTTCAGACAGCCCATGCCTGGCAGATTCGGAGAGCAGCTTGAGACCACGCTCGCGGAGGAAAAGCAAGCAGAATGGCGGCAGTGCTGGTAGCTCACCTGTCCACTCGTTCAGCTTCGGCTCAGGTCAGCCCACTGTGCACAAGAGTCCCAGCCTGGATGAGAACCTGAAGTCCCCCATGCTGCTCGGCTTGCCTGGTTTGGGAACAGGACCCATGTGGACCAAACATCGAGACACGGCACAAGCCACCACACCCGTCACACCAACTGGCTGTGAGAAATTTTTATCCTGGCTGGACAAAACAAACGAGTTCATTGacaaaGCCTCCAATAGCCATGACCCAGCTCAGGCCACCACGCCCGTCACACCCACCGGTGATGCCCCCTGGTTCTACGAATCCCttagtggaggaggaggagggggcagTGCTGGGGCGGTGCACTTTCCCGGGCCTCTGGGCTGTGGTGCCCTCCCTGGGCCACGCGAGGCGGTGCGTCTGCGCCCGAAAGCAGGTGAAGTGCGGGAGGCGCGAGCGAGCTGGCACGAGGACGCCCCTGTTGCCGGTGGCAGCTCAACCGACAAGCAGTTCAAAAGGCGCAGCTGCCAGATGGAGTTTGAGGAGGGGATACAGGAGACACGTTCACGGGAGGAACTTGGCAAAATCGGGAAGCAGTCCAGCTTCTCAGGCAGCATGGAGATAATTGAGGTGTCCTGACAACTACACTGCCCGCGGGGGTTTGAGATGCATGAAGGCGGACAGGTGCCACCTACAAGCGAGGGGAACTGAGGAAGACCGGCGAGGGCCGGCTGATTTACGTTGTTTTAGCTTTGTAGGCTCAAACTATGCTAAAAAAGGCTCTGAAATTAGTGACTGAGAAATGGGACATTTGGAACTTTTGTGTTTGTCTCTGAGATTTGGAGTTAACAGAGCTAGATGCGGGCAGATTCGACTCTGTCTCCAGTGTTTTCAAGCCATTTCCATCCCACTAGGACTTAGGGAGGGTTAAGGACTAGGAATGAACTgctgtacatactgtatgtgcACAACCAAACCCAGTCACAGAACCCTGCACTCTCCTAACGGACATGTTTCCtctccaaaataaaaaacaaaaatgaagctTTACCAGCCCAGCCCTCACAGTGTATTgagaataaataaaagcatgGCTCAGTCTCCTCCGATTCACATGCGTACTCCTGGTATTACTCTATCACAAGACTTGATATTGTATTTACACCTCCACAGCACAAGGGGGGGGGCCTCTACTGACAGACTCAAAGCCCTGGTACAGACTCTCGCTGATCAAAATGAAGGCTGCTTTGTGTATCGCTTTTGTCCTCTCTGCTCCTGTATCCCAGAAAGCGTGGAATTCTGGAGGAGGATGCAGGAATGTTGTTATGAAGGAAAAGCATTGTGGATGTTTTCCTGCAGTGCCCTCTGTCACTCTTttgttctctgtgtttgttcctTACCTTTACCCATatttcaccccccccccccctttcacCTCCCCCCTACCCTCACTGTACAATGGGAGGGCATGAAACGAACTGCCGCCCACTGTTCTCACACTGAGCATGTTCCGAGGCTGCTGGTTTCCCCTACAGATGAATAGATATACGCTATACATAGTTATTTCAATGGactaatgtttattattatttttttgttttgattctCTCAGttatagttttaatttattataccTGTTCATTCTGGTAATGAGAAATAATATAATGATTGTGGAAtcctttgttttgcttttttcgttgtttttttgttgatgttgaCCTCAGTGGCTGTATGGTATTTATAAAATCACTCACAAAACTGATACACAACCGCAAAGCAATATGCGCTattttcttcatctttttttcatCCTCTTTTTCATCTATAAGGGAGAGAGTGATTATTAAAATGGCTTCACCTGGTATTTAATGCACTTTCTGTTGCTTTAAGAAAGGAGCTGATGGAGCGTCTCATCACAAGGGTACCACATTgcttttatatacagtagattctgcatttgcattagcattagcacacacacacgtgttgATGCCCTGCACTGTGTAATGAGCTGGGGCATTTAGCTAGCATGGTTTCATCATTTACAGGAATGGCTCTGAAAACGTATAAGCCTGTATGAGCTAAAATGATGTAAAATGTGCAGATTGGAGCTCTTTTTTATCTACAAGCACATTATGATGAATGCAGATCATAAAATTGTTGACAGGGACTCTTAGTTTGGGTTCTGTCCCcttttgttctttatatttatgatttatttattgtgagCTTGGGCCTGTTTCTAGACGACTGTGTGATGACtgtgtatggatggatggagtgtGAGTGACTAATGTAGATGGACCTTGTGAAATCCAAATCATCAAATAGATTTGAGTATTTTTGAGCTTTTATTTCTTCACTCCTGTAAGCGCAGGCGATTTTTGAACATGAGGTATTAGTTTGACACGTTAGCGGTGCCTACCAGTCATCTTGTCTCAGTTATCTGTTTTCTGGCAAGGTAGATCTGGTTCACGTTGGGTTAAATGAAGTCCACACTTGTAGTGTGGCACAGACAACAGCACATGATGCTTCAGTTTAGCTCAGGGGAATTGCACACGAGTCCCGTCTCTGAGCTCTGACTACCTGCacaactctctttctctctctctctctctctctctttctctctcgctctttctttttcacgctctgtctctcactcagtTTCACTCACTGTATTTCTCTCACGATGTCTCTCACAGAACCTCACTGCTTTACCTTATTGCcatattctcttttttcagcctcatt

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98287 lncRNA upstream 50663 11521012 ~ 11522661 (+) True G72882
TU98277 lncRNA upstream 347138 11224794 ~ 11226186 (+) True G72876
TU98274 lncRNA upstream 347396 11224851 ~ 11225928 (+) False G72876
TU98272 lncRNA upstream 350320 11222774 ~ 11223004 (+) True G72875
TU98268 lncRNA upstream 388343 11184666 ~ 11184981 (+) True G72871
TU98379 lncRNA downstream 178406 11812999 ~ 11818238 (+) True G72946
TU98442 lncRNA downstream 309384 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA downstream 309384 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA downstream 309384 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA downstream 309384 11943977 ~ 11951765 (+) False G72993
XM_007228064.3 mRNA upstream 441047 11123179 ~ 11132277 (+) True LOC103024122
XM_007228063.3 mRNA upstream 456694 11105654 ~ 11116630 (+) True th
XM_007228059.3 mRNA upstream 524926 11037500 ~ 11048398 (+) True LOC103022764
XM_007228060.3 mRNA upstream 538496 11029487 ~ 11034828 (+) False spty2d1
XM_007228089.3 mRNA downstream 31222 11665815 ~ 11733195 (+) True LOC103029705
XM_007228088.3 mRNA downstream 59965 11694558 ~ 11733195 (+) False LOC103029705
XM_007228087.3 mRNA downstream 63208 11697801 ~ 11733195 (+) False LOC103029705
XM_007228086.3 mRNA downstream 84218 11718811 ~ 11733195 (+) False LOC103029705
XM_022672134.1 mRNA downstream 291394 11925987 ~ 11938380 (+) True LOC103038976
TU97933 other upstream 1491184 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2423905 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4687783 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5034530 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5535576 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 968759 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1236891 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3014236 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3256941 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4652083 16286676 ~ 16288329 (+) True G74169

Expression Profile