RNA id: XM_007228089.3


Basic Information

Item Value
RNA id XM_007228089.3
length 2828
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103029705
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11665815 ~ 11733195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATGTAGCAGAAGGGCGAAACTGGTCGGTACAGCGGCAGAGACTGAGACTGAGCGGCGCTGCAGTCAGTCCGGCACACGGAGCACGCACAGCCCGCCCGGAGCCCGGTCTGAGGGTCTGGAAGCTGCACAGAGGGCAGAGCGGGGTCGGCTTGGCTGGTCAGGGCTGCAGTTTTCGGGGAGGACGGCTGAGCTGCTGGTGTTACCCAGCTTACCGCTGAGCTGAAGCTCAAAGTCAATGCagcctccttctcctcctcatcctccgcCCTCAGACCCACACCTCTACACCCGCCGCACAGCGCTGCTTACCCGGCTTTAGACCCACACACGCACCGGCGGGCGGGACCGGGCTCTTCGCTGGAGGCACCGGGACAAGTGGAGCAGGGAGGCGCGCTCTGCCCTGGCCGGACACGGTGTATGTGAGCTGGCCGCATAAGCCGAGGCAAAAGCGGGCTGCGTGGATATCTCCTCCCTTGGTGGCGGCAGGATGGACTGGCTGATGGGgAAGTCTAAAACGAAGCCCAATGGAAAGAAGCCTCCAGCCGAGGAGAAGAAGCACTATTTGGAGCCGGAGTACACTAAAGTGCGGGTGGTGGACTTCGACCTCAAAGAGCTGGTGGTGTTACCCAGAGAGATAGACCTCAATGAATGGCTTGCCAGCAACACAACAACATTTTTCAATCTCATCAACCTGCAGTATAGCACAATCTCAGAGTTTTGCACTGGTGACACATGTCTAGCCATGACGGCCTGTAATACAATATACTACTGGTATGATGAGAGGGGGAAGAAGACCAAGTGCACAGCGCCTCAGTATGTGGACTTTGTCATGAGTTTAGTGCAGAAACTAGTGACAGATGAAGAAATCTTCCCAACGAAATACGGTAAAGAGTTCCCCAACTCGTTCGAGTCTCTGGTGAAGAAGATCTGCCGGTACCTGTTCCACGTGCTGGCGCACATCTACTGGGCACACTTTAAGGAGACGGTGGCGCTGGAGCTGCAGGGACACTTGAACACGCTGTACGCACATTTCATCGTCTTTGTGAGGGAGTTCAATCTGGTCGACCCTAAGGAGACGTGCATCATGGACGACCTGTCAGAAGTGCTGTGCACCCCCCTGCCCCCCTCCCCACAACAGAACCACGTGACTGAGAGATGAGCCGCCCGCACAGCCACCGAGCCCCTTTAGCgcggaggaagaggaggatgaagagggAGTGAGAGGAGGCCCTGGGCAGGGCCGGGCTGCTGGCAGGACTCGCAGACCCTTTGACATCCTGATGACTTTTTTTGACCACCGTAAGAATCAgaggaaggggcggagcttgGGGGAAGGCAGTGCCTCTGACCAGTGCACACTGGTGTGGAATTCCCCCCCAATAACAAATAGCCCCACATGTCTACCTACCTGCAATCTAACTAGGAACAAtttctattctttttattttattttttagcgcttttatgtttttgtttttatttattttcgtgCACATTCTTGGTGGATCTGAGGTTTGTGAGGATGGCTGTTTTCAGTTTGGATGCATTCGCATTGCCTAATGCATGAGACAGAAAGCCGGTTAGTAGTTCTGCTTTGAGTCGACGCATAGCCTGCGCAGGTGGCCTGCACTGTTGTCTGCATCACTCTGCAGAGACACTGCGGAGGTAGAAATGCTGGAATCCAATACTCAATGGCCAATTACAGATATTGCGGTCGTCATGTTGCATAGTTACATTTTAGGGAAGTGCATGCCAGGCTATAGCAAAGGCTATGGTGTAGGTATGCAGCACACTCCATGCAGAAGCATAAATCGGCTCAAGGCTAAAGCACTGTCTCTGCTATTAGACCAGGGTTCTCAATTCTGGTCCTGGTGCCCCTCTGCCCTGTTAATGTATGGCTTTCTCTTCTCACATCCGATTCAGCTCATTAATGAGCTCTTTCAGCGTTTCAGTGAGTGTGCAGGGAATCCTCTTAAATCGCACCAGGTCCAGGATTGAAGAGCTGTGTTAGTGATGTATTAAATAAACTCATAGAACCTAACCTGCCCTGACTGTTAGTTCTCCATGACTGAGACTAAACCATAAACACTCATTCCTTCATGAAGCCGGTTCCAGTTCACTTGTTCTGTCGTCTCTTCATCGCCCCTTAACCCTCCAATCTCCTCCTCCCTTCTTtccctctccctctatctctttccctctcttcccATTCCCTCATTCACAGTGATGTTCTGAAACGTTAGAAAGGTCacatgatgatgataataaaagGTTGAACACCAGAAATGAATGTCCTGGAGAAAGAAGGCTGATGATGAGCGGTATGGtcatctcttctctctcacactcagtgATCAGCGTGAAGCTGGTAGAATGTGCTATGATTGCATTCAGAATGGGTGAGACTGATGATTGGTTGATGTGTGAATAGACAGTGCAGATGGTTTTTGTGGCAATGCATTGAGGATCCATCCTCCAGGGTTGCAgccttttattctctttttctttacagtttgtttttattttttatgtttatcaaAGAGGTCATGAACATTAAGGCTACACGTGTGTAGAACATGCACATTCTGCTTGCAGTTATAAGAAATAGATTGTAACTATGTAAAGAAAATCGCAAGTGGATAACTTCAGATTAGCCTCTATGGAGGGAGAtttgtttcctctttttttattttatttatttttgacctTTTATTTGCAGGGTTCTTAAGTTCTGGCtttcttttatgtattttaattatcTAAGTTAaagcaatttattattttaagctcTGCAAATTATAATCtaataaaagattttaaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98320 lncRNA upstream 40319 11567577 ~ 11625496 (+) True G72893
TU98287 lncRNA upstream 143154 11521012 ~ 11522661 (+) True G72882
TU98277 lncRNA upstream 439629 11224794 ~ 11226186 (+) True G72876
TU98274 lncRNA upstream 439887 11224851 ~ 11225928 (+) False G72876
TU98272 lncRNA upstream 442811 11222774 ~ 11223004 (+) True G72875
TU98379 lncRNA downstream 79804 11812999 ~ 11818238 (+) True G72946
TU98442 lncRNA downstream 210782 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA downstream 210782 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA downstream 210782 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA downstream 210782 11943977 ~ 11951765 (+) False G72993
XM_007228082.3 mRNA upstream 31222 11563332 ~ 11634593 (+) True LOC103028645
XM_022672122.1 mRNA upstream 31222 11573324 ~ 11634593 (+) False LOC103028645
XM_022672121.1 mRNA upstream 31222 11573324 ~ 11634593 (+) False LOC103028645
XM_007228084.3 mRNA upstream 31222 11620856 ~ 11634593 (+) False LOC103028645
XM_007228064.3 mRNA upstream 533538 11123179 ~ 11132277 (+) True LOC103024122
XM_022672134.1 mRNA downstream 192792 11925987 ~ 11938380 (+) True LOC103038976
XM_007228102.3 mRNA downstream 206329 11939524 ~ 11941817 (+) True myod1
XM_007228103.3 mRNA downstream 206329 11939524 ~ 11941817 (+) False myod1
XM_015600993.2 mRNA downstream 222429 11955624 ~ 11963784 (+) True LOC103034044
XM_022672140.1 mRNA downstream 632170 12365365 ~ 12417357 (+) True znf469
TU97933 other upstream 1583675 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2516396 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4780274 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5127021 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5628067 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 870157 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1138289 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2915634 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3158339 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4553481 16286676 ~ 16288329 (+) True G74169

Expression Profile