RNA id: XM_007228100.3


Basic Information

Item Value
RNA id XM_007228100.3
length 1012
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC103031503
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11944425 ~ 11953789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAGAAGGACATAATCGGCCCTGGATGTTTGCAGAACTTTACAGCCAGTCTCCATCTCCAGGGAGCTCACTTCCTTCAGCTTTCTGAGTCACAAAGTCCACTATCATCATGTCTGACACAGAAGACGTTGAGCAGCAGGTCGGCGATGAAGAGGAGAAGCCAAAGTTCAAGCCCAGTGCACCCAAGATCCCAGAGGGTGACAAAGTGGACTTTGATGACATCCAGAAGAAGCGTCAGAACAAGGACCTCATTGAGCTGCAGGCCCTGATCGATGCTCACTTCGAGCACagaaagaaggaggaggaggagctgatcGCTCTCAAGGAGAGAATTGAGAAGCGTAGGTCTGAGAGGGCAGAGCAGCAGAGGATCATGGCTGAGAAGGACAAGGAGCGCCAGGCGAGACGTGAGGAAGAGAGGCTGAAGAGGCAGGAGGCTGATGATAGGAAGAAGGCAGATGAGGAGGCCAAGAAGAAGTCTGCTCTGTCTAGCATGGGCTCCCAGTACAGCAGTTACCTGcagaagGCTGACTCCAAGAGAGgcaagaaacagacagagagagagaagaagaagaagatcctGGCTGAGAGACGCAAGCCACTCAACATTGACCATCTCAATGAGGACAAGCTGAGGGAAAAGGCCAAGGAACTGCACGATTGGATGAAGACCCTGGAGGCTGAAAAGTTCCAGCACATGGAGAGACTGAAGAGACAGAAGTATGAGGTTACAACACTGCGTAAGAGAGTGGAGGAGCTGAGTAAATTTAGCAAGAAGGGAGCCGCAGCTCGCCGCAGAAAGTAAGCACCCACCTCCAAGGCCCACGGCACGGAGACGAAACTCAAGTCATAGTGATATCGCCATATTTACTAGCTGTAGATCTGCTCAGTGCTCTGCAGGTCTCTGTACCTGCACGTTGGCAAAGATCCACACTCACGCTTTCTCGTCTTGGACTGCTGTTTGGttctcatttccttttttccatgtaaataaagtgttacctttaaAGCC

Function

GO:

id name namespace
GO:0006942 regulation of striated muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA downstream 209579 11734144 ~ 11734846 (-) True G72974
TU98401 lncRNA downstream 211276 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 712747 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 718471 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 812152 11079088 ~ 11132273 (-) True G72857
TU98475 lncRNA upstream 94842 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 171752 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 240789 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 240789 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 549079 12502863 ~ 12539230 (-) True G73119
XM_022672129.1 mRNA downstream 109685 11817026 ~ 11834740 (-) True ush1c
XM_022672128.1 mRNA downstream 109685 11817439 ~ 11834740 (-) False ush1c
XM_015600969.2 mRNA downstream 109694 11805817 ~ 11834731 (-) False ush1c
XM_022672124.1 mRNA downstream 140390 11739962 ~ 11804035 (-) True abcc8
XM_022672136.1 mRNA upstream 3786 11957570 ~ 11996201 (-) False LOC103031193
XM_022672137.1 mRNA upstream 3786 11957570 ~ 11996201 (-) False LOC103031193
XM_022672135.1 mRNA upstream 3786 11957570 ~ 11996201 (-) True LOC103031193
XM_022672138.1 mRNA upstream 11401 11965185 ~ 11996201 (-) False LOC103031193
XM_007228105.2 mRNA upstream 79505 12033289 ~ 12036047 (-) True LOC103034366
XR_002650239.1 other downstream 168286 11767509 ~ 11776139 (-) True LOC111193095
TU98300 other downstream 399202 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 399289 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2718866 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2770116 9165878 ~ 9174309 (-) True G72449
TU98666 other upstream 610564 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 610564 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 610564 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 657050 12610834 ~ 12621356 (-) True G73172
TU99163 other upstream 2588425 14542209 ~ 14545438 (-) False LOC103025073

Expression Profile