RNA id: XM_007228102.3


Basic Information

Item Value
RNA id XM_007228102.3
length 1963
RNA type mRNA
GC content 0.47
exon number 3
gene id myod1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11939524 ~ 11941817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCGCCTCCTCAGCAACAAGTAGCTGCAGGCTGCACTGGGACAGGAGTTGGTGGAGCCCTACCTGCAACACTCactcattccctctctcttgTCTTTCACTCACTGCAGACaagagtgtgtgtttaaacaGGACAGAAACCTGACAGAAAGTGTCTGAGCGCATTGGAGGCTCTCTGGAGTGTTGGCTCAACTCCTACCTtattttacacacttaaaaaaagtttcatcaCTTTGGTTTTTTGGGGGgtcagaaaaaagagagatggagcTGTCGGATATCCCGTTCCCCATCCCGTCCGCGGACGACTTCTACGACGACCCGTGCTTCAACACCAACGACATGCATTTCTTCGAGGACCTTGACCCACGGCTCGTGCACGTGAGTCTGCTCAAACCGGACGAGCACGGCCACGCGGAGGACGAGCACGTGCGCGCGCCCAGTGGCCACCACCAGGCGGGCAGGTGTCTCCTGTGGGCGTGCAAGGCTTGCAAGAGGAAGACGACGAACGCGGACCGGCGGAAGGCCGCCACCATGCGGGAGAGGAGGCGCCTGAGCAAAGTGAACGACGCCTTCGAGACGCTGAAGCGATGCACGTCGGCCAACCCCAACCAGAGGCTGCCAAAGGTGGAGATCCTGAGAAACGCCATCAGCTACATCGAGTCCCTGCAAGCTCTGCTGCGCAGCCAGGAGGACTCCTACTACCCGGTCCTGGATCAGTACAGCGGGGACTCGGACGCGTCCAGCCCCAGGTCCAACTGCTCCGACGGCATGATGGATTTCAACGGCCTATCATGTCCATCTAGAAGAAGAAACAGCTATGACAGTTCCTACTTCAACGAGAGTCAAAACGTAGATGTGCGGAGCAGTAAATCCACAGTAGTGTCCAGTCTGGACTGTCTCTCCAGCATCGTGGAGCGAATTTCCACGGAAGCGCCCGCATGTCAGCCGCTCGCGACGCACGAGCCGTCGGActgcagcagcaccagcagcccGCGTTCTCCGCACGATGCGCCCGCGCTCAGCGAGACGGTACCGAGCACTCCCTCCCCCGGGAACGCCGTGTACCAAGTCctgtagaacacacacacagacatgcacacactcatacatacatacacacacgcgcgcgcggtGTACAGGAGCCTTCAGGACTGTGCTGTTCCTGTGCGGGAGAACAGAAGTGGGAGAACATAAATTTTTACCTTTATCCTTTCTTTCGTTCTCTTTTCTCACACTAtcttcattttaattcatttagtcTTTCCTggatctttatttttattttattttttctttcctttattttcctggtttctttttcctttatttcttcCTTCCAAACTTTTCTTTCTTCGTTCTTTCCTGTATTTCcacacttttctttttatttattgtcctTCTGTTTTTAGTCCGATCTTTTTTCACATGATATTCATTTaggtttttctttcattctcttcaCTCTTTCTTTGTACTTTTATACATTCTTTCTTcattattgtatttgtatttatttcttgttgttcggactttttctttctttctttctttttcttgtccTTTACTATTTTGTATCTTTTTATTCTATCTTTTTTctgtagaaaatataaaattccATGGTATCGATGGCTCTGCCGAAGTCAGTTTCTTAAAAccttttatttatatgattGTCAGCTGCAATATTGTGACCATATCTTCCCTTGTTGAACCTCTTCTTTCTGTCTCCTTCATCTTTTACGATTTCCTGATTGTTCATGTGAGAAAACACTTCATCTATGAGAAGTAGAGGACCAGttttgtatatgtgtatataagagCTGTTTTGTTAAAAGGAGAAGTGATCAAACTTTGTATTTAATGCTGCCTGTGTGAGGAGTTTGTTGTGTCCGacgtttatatttatacttcttCAGTGAGTGAATGTGGattaataaagaaatacttatttatacacaca

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0071392 cellular response to estradiol stimulus biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98379 lncRNA upstream 121286 11812999 ~ 11818238 (+) True G72946
TU98332 lncRNA upstream 259702 11610470 ~ 11679822 (+) True G72905
TU98320 lncRNA upstream 314028 11567577 ~ 11625496 (+) True G72893
TU98287 lncRNA upstream 416863 11521012 ~ 11522661 (+) True G72882
TU98274 lncRNA upstream 713596 11224851 ~ 11225928 (+) False G72876
TU98442 lncRNA downstream 2160 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA downstream 2160 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA downstream 2160 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA downstream 2160 11943977 ~ 11951765 (+) False G72993
TU98456 lncRNA downstream 36391 11978208 ~ 11978882 (+) True G73001
XM_022672134.1 mRNA upstream 1144 11925987 ~ 11938380 (+) True LOC103038976
XM_007228089.3 mRNA upstream 206329 11665815 ~ 11733195 (+) True LOC103029705
XM_007228088.3 mRNA upstream 206329 11694558 ~ 11733195 (+) False LOC103029705
XM_007228087.3 mRNA upstream 206329 11697801 ~ 11733195 (+) False LOC103029705
XM_007228086.3 mRNA upstream 206329 11718811 ~ 11733195 (+) False LOC103029705
XM_015600993.2 mRNA downstream 13807 11955624 ~ 11963784 (+) True LOC103034044
XM_022672140.1 mRNA downstream 423548 12365365 ~ 12417357 (+) True znf469
XM_022672142.1 mRNA downstream 516728 12458545 ~ 12485409 (+) False LOC103039191
XM_007228121.3 mRNA downstream 516731 12458548 ~ 12485409 (+) True LOC103039191
XM_022672141.1 mRNA downstream 531757 12473574 ~ 12485409 (+) False LOC103039191
TU97933 other upstream 1857384 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2790105 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5053983 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5400730 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5901776 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 661535 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 929667 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2707012 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2949717 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4344859 16286676 ~ 16288329 (+) True G74169

Expression Profile