RNA id: XM_022672155.1


Basic Information

Item Value
RNA id XM_022672155.1
length 7732
RNA type mRNA
GC content 0.49
exon number 23
gene id man2a2
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12680106 ~ 12715658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGTCCCGACCATTCCGaccgcagcagcttcagcagcagcagcgctgatGGAGCAGCAGTTctggaagaggaggaggaataaCGGGTGAATAAAATCGgTATTTGCTCAGCTGTGTGGAGTGTTGATGTTTGGAGCCAAACTAAAGCAGCATAAGAACAAAAGAACATTGGATGTCTAGTTTTTTCCTAATCTGCTCAAGCAGACTGTTCTGGATTGTCTTTTGAGGTGTCCTTGGACTTCACCTGTGTTGCCTCCTCACTTTTAATGTAGGTGGACTGAGCAATGTTTCTTATGCAAGACAAGGAAGCTTGCTTTGCTGTTTACATCTAGCCAGGCCAATTTGAATGTTTGAATAGTAATCCCAAATCCCCTCTTGGAGACTGCTAAGTCAGTGACAGGCACTGAGCTGAGAAGATTAATATCCTATTAGATCTAAGAGAGCAGGGGAGGAGGAACACCTGTTTCACTGAACATCCAAATCCAGGCCACTCTGCTCATATTGTATTTGACTTTTCTCTTGTGTATAAGACagtgtctttttctttctctgcgTGTCTGTATTTTCTTCCACCTCATTCCCACCCACAGAGCGTGAAAAAGAGGCAGTCATTGCTTGTTTTCGCCATCTTTAGTATAGGGGAGACTGTGTTTAGTTTGCTAAATGGTGGCCTCAAGAGCATAGTGACATTCATGGTAAGCCAGCAGCCCCCTTCAGCCTGGCTTTTAAAAAAGGAGGCTAAAGAAAGAGGGAATGTGATGAGCCAAGTCTTTCTCATTCAGCCTTTGCCTCTGAGCTGCTCTCTGGAAACCTACGTTCACTGTGATGGCTTTGTCTCCTCGGCCAGCTGAGAGAGAGACGATCCCGGGCGTATGAAGGACTAATCTTAGGACTGTGAATCAAAAGCAaaacacacgcatacacacatacatgctgAATGCTGCAGAAACAGTAGGCTCCCTGTCTGGGCTCCCACTGTTTGGGACCTgtgttgttcttttcttttttctgctctCTATCCCTGTGGGTTTGGATGCTTGAAGACAAGAGCTACTTTGAAGGAGCAGAACTTGGCGGCGGTTTGGTGGCATTCGACAGGCTGCCGGCCCATTCTAGCTGACCGTCGTCCTCTGTGCTGCTCGCCCACTGGACCTGCTCTCTAGACAAGAGCTGTGTGGGAGTGCGGGGTACATGAAACCCTGCTGACAAAGCCTAGCCCCTGGACCTTCTGGGGCTTGtaaggattttatttttgcaccttTTTCATTAACCTGTGGATAATTTTTCCACCCTCACAATCCTTGCTGCATTGCTCTTCTGCGGAAAGGCCAGGATGAAGCTGAAAAAGCAGGTGACGGTGTGTGGCGGGGCCATTTTCTGTGTGGCCGTCTTCTCCCTCTATCTGATGCTGGACCGGGTCCAGCACGACCCTGCCAGGAGACAGAATGGGGGGAACTTTCCAAGGAGCCAGATTTCGGTGTTGCAGAACCGCATTGAGCAACTGGAACAGCTTCTGGAGGAGAACCATCAGATCATCAGCCACATTAAAGACTCTGTGCTGGAACTCACAGACACGGGTGCTGTCTCCCCCAGTGGCCACTTACCCTTCCGCAGCGCCAATGGCTCATGGGTGCTGCCCTTTGATGGCAGACCTACCTTTCTCTCAGTAAAGCCCCAGGACTGCCAGTTTGCACTGGGCCGCCGTGGCCAGACTGACCTGCAGATGCTGGATGTGTATTCCTTGCTGAGCTTTGATAACGTGGATGGAGGCGTGTGGAAGCAGGGCTTTGAGATCACATACGAGCCTTCCGAGTGGGACAGTGAACCCCTGCAAGTTTTTGTAGTGCCCCACTCCCACAATGATCCAGGCTGGGTCAAAACTTTTGACAAGTACTACAATGACCAGATGCAGCACATTTTCAATAACATGGTGGTCAAGCTTGCTGAAGACCCACGCAGGAAGTTCATCTTGTCTGAAATTTCATTCTTTGTGAAATGGTGGGACAGTGCAGATGCTCACAAACAGGAAGCAATACGCAAACTTATCCTGGGAGGGCAGCTAGAGATCGTGACAGGGGGCTGGGTAATGACAGATGAAGCCAACGCACACTACTTTGCCATGATCGACCAGCTTATCGAAGGCCATCAGTGGCTGGAGAGGAACTTGGGTGTGATCCCTCGCTCAGGATGGGCTGTTGACCCTTTTGGCCACAGTGCAACGATGCCTTACCTGCTGAAGAAAGCTAATGTGACCAGCATGTTGATTCAAAGGATACACTACTCCATTAAGAAGCATTTTTCCTCTACACGTAGCCTGGAGTTTATGTGGAGACAGGCTTGGGACCCTGAATCAGGAACAGACCTGTTCTGTCACATGATGCCCTTCTACAGCTATGATGTGCCTCACACCTGTGGGCCAGACCCAAAGATCTGCTGtcagtttgactttaaaaggcTGCCAGGCAGCAGGGTCAACTGTCCTTGGAAGGTGCCTCCTCGTGCCATCACAGACGCCAACGTGGCAGAGAGGGCGAATGTCCTTTTGGACCAGTATCGCAAGAAGTCCAAGCTTTTCCGTAGCAAAGTGGTACTAATACCACTGGGAGATGATTTCCGCTATGATAAATCTCTAGAGTGGGACCAGCAATATATCAACTACCAGAAGCTTTTTGATTACATGAACTCTCacccagaaatgcatgtgcagGCCCAGTTTGGCACTCTGACAGACTACTTCAATGCTGTGTATAAGGCTAATGGGGTCTCTCAAGGAGCAAGACCACCTGGTTACCCCGTACTGAGTGGAGATTTCTTTGCTTACGCTGACCGAGAGGATCATTACTGGAGTGGCTACTACACCTCCAGACCCTTCTACAAGAACCTGGACCGTATCCTCGAATCCCACCTAAGggGTGCAGAGATCCTGTACAGCTTGGCTGTGTCTCATGCACGCCATGCAGGCATGGAAGGACGCTACCCCACCTCAGACTACTCCCTTCTGACAGATGCCAGACGCAACATCGGCCTTTTCCAGCACCATGATGCCATCGCTGGAACTGCCAAAGAGGCAGTTGTTACTGACTACGGGACAAGATTACTACGCTCACTGATTGGATTGAAAAGGGTGATCATTAATGCAGCACACTTTCTCATCATGAAGAACAAAGATGTGTATCGTTTCTACCAGACCGAGCCTTTCCTGGAGACGGATGACAGACGTGCCACACAGGATTCCTTACCCCAGCGGACATTGATTGAGTTGGATTCCTCTCCGAGGTACTTGGTGCTGTTTAACCCAGTGGAGCAGGAGCGGCTGTGTGTGGTCACTGTACTAGTCAACTCTGCGAAGGTCCGGGTGCTCACTGAGGATGGACAGACCCTACCGGTGCAGCTCAGTGCACAGTGGAGCTCTGCTGTACAGATGAGTGGAGAGGTCTATCAGGCTTCCTTCATGGCTCGGCTACCAGCTCTGGGATTGGCTGTGTTCCACCTGTACGACTCTGTTGATTCTCCCATGACTCTTCGTTCCGATACACTGCTAAGGTTACCAGGCCGTAGCCAGACTGTGCGAGGCGTGGATCCCCTTCCTGTGCGCTCACAAATAGCTGACCCCCAGCCATTCTACATCCAGACCCAGTCCCTGACATTGGCCTTTTCTGGCACCACTGGTCTGCTGGAGAGTATCCGGCGTAAAGATGACCCTCAGGAGGTTCGGGTACAGGTTCAGTTCTTTACTTATGGAACTCGCCCTTCCAAGGATAAGAGTGGTGCTTATCTGTTTCTACCGGATGGAAATGCAAAGCCCTACACACAAAGAGATCCTCCTATTGTGCGCGTGGTGGAGGGTCCTCTTTTCGCAGAGGTGGTCACGTACTACCAGCACTTCCAGCAGACAGTCCGCATACACAATGTTCCAGGTGTTGATGGACTGTCTCTGGATATCACCACCTTAGTGGACATCAGGGACCAGACTAATAAAGAGCTGTCCATGCGGCTGCATACAGACATTCAGAGTGAGGACACGTTCTACACAGACCTCAACGGATTTCAGATACAACCACGCAGATACTTTCAAAAGCTGCCGCTGCAGGCCAACTTCTACCCTATGCCAACCATGGCCTACATCCAGGATAGCCAGTACCGTCTGACCTTGCACACGGCCCAGGCACTGGGGGTCACCAGCCTTGCCAGCGGTCAGTTGGAGGTGATGCTGGACCGCAGATTGATGCAGGACGATAACCGGGGTCTGGGACAGGGTGTGAAGGACAACAAGAGGACAGCCAACCGCTTCCGTCTACTGCTGGAGAGGAggaccagcagcagcaggGCTGTTGACAGTGGACCAGTCAGTTTCCCCTCACTGTTGAGTCACATGACCTCCTCCATCCTCAACCACGAGGTTCTGGCACTGCCGGTCATCCCGAAGAAGCGGGGCGTGCCCCCCCTCCGCACCTTCGCCCCACTGGCTAATGCACTGCCCTGTGACTTCCGTCTGCTCAACCTCAGAAGCATTCAGAACCAGGATGCCCAGTCCCCCTCCCTGTACACAGCTCTGCTCCTGCACCGCCTGGGACTGGACTGCGGCTTAGAGGCCCAGAACCCTGGCTTTAACTGCACTACCACGCAAGGAAAGTTGGCCGTGTCTGCGCTGTTCCGGGGTTTGGACCTGCAGCTGCTGCAGCCCATGTCTCTGACGCTGATGTACTCGGGTACTCCTCTCTCCAACAGCTCTATCATCAGCCTGGAGCCCATGGAGCTGTCTACCTATAAGCTCAAACTGCGCTAGGACTCGACAGAACAGGGCCCCGGCCCACCGGAGCGGCCCGCACACTACTGCTGTCAGTGTAGGACGGGTGGACACTTGCAGAGTTTCTCTCGTCTTTCTCTGAGGCGGAGGACGAGcgtaaacacacaaaaacaagacCAAGCGATATGGGATGTATGAATCACAATGGAATGTGCTGGACCTTCTTAaagactgtttgtttgtttttacaagGGAGATTTCAGCACAGTTCCACATACAGTAGCTGTCCCAGAACCTGAAATGAAGatatgaagattttttttgtttgtttttggattTAATATGCTTGAGATTCATTTCAGCAGATGACTAGTGGCTTTTTATTAGACATGGATGATTGATGAGGAGCATCTGAAACTTCATTACTTTGTCgtcctggctggctggctggaaCCACTGACATTTCTTTCCATTTCCCTtccccttctctttctctctctctcttgctctctcgctcCCCTGACCAccgttctttttttctgtatcttgCACTGTATGTTGAAACTCTTGGGactctgtactgtatgtaaatatgtCTTTGACTCCTTCATGAACTTGTGGGACTGAGTGCAATATGTGAAGCTTCTACTtcaggggagggagggagggattgGGTCTTATTTTGACACCATTATGCAGAAGCTGAGCTTGAAACTGTGTCGCTGTCCTCTGAGCTCTAACCTCTTCTCCCCTTTTGTACTTCAGTGGATGGACTTCGCTGCTTGCAATAGCTGCATGTTCCTGTGAATGTGTGCTCGCTCACTCATTTTGGCAGTTGAGTGGAGACTGTTATCGTCACCTACGGTCCGCTAAGGGACTTGCCCTACTGCCCCCGTACTCCCACTCAGATATCAGTCAGTGGCTTGGACTGGTCTGTTTAGGTTGGGTTCTCCTCACTCATCTTCCTCTGCTGCAGTGGGAAGAGAAATGATAAAGTGACTGGCAGAAATATAGCTTTTGTTTTTACCTGGCTTATCCTTCACTGTTGACCCCTTTTTGTTGCTCAAAAATGCTGCTCCCTCCAAACGAGCCAGTTTACACATTATGCGCATCGTTCCACCCAGGCCGACCGCGGTAAGGATGGTGTAGCATAAAGTATGCAGTAGGTCAGGAGTGTCAAACTCAAGCCTCAGTTTTGCAGAGATCATTTTCCGGTGAGCCAGTCTTGTTTACCGTCATCTAACTCTAAATTCAACTCATGAAGGCTGTTGTCGTCGTTAGCCTCGCTTATGAGTCAGGTAAAATGCACTAGAGCAGCAGTCAATCTGCTTGCTGCTGAGAGTTTAACTCTTTATTTACTTCCATTGGAGCTTTGGCGCTTTTCCCCTGCAGGACCTAATGGTTGCTTAGACCATACTTTACCCAGTCTTGCATACAGGTCTACACCAGCATGGAATGGTACAGTTCCAAGATGTTACAGTCAGGACTAAGATATTCAAAGCGCCTGATTTCACAACATTAAAGAGATGCTAGCAATGCTAACTTAAaattgagcattttttttttttatatgtttaagcAACAAAAAGAGCTACTGTGTCCACCTTCGACCAACAAGATTGTTCTTGGTCGTTATCTgtacaggaaataaaaaaaagaccctGGGTCTTGTAGCACAATGGTGACAGAAACGTGGAGctaatcagccaatcaaaatTCTTACTTCACTAAGCTCTTTCACTGTTAGTAAGTATCCAAGGATCCAAGGTTCAGACTAGGTTACTGAAGAGGCTAAAAGACTTCTTGTTCACCCTGAAGCTGGCTGGGCAATGATGTCTGTTGAAGACACcctaaacactgtttaaaacaaaGACTTGGAACTTGatagggataaaaaaaaaaaagaaaagaaaaagaaaactggaCTCGATCTGTAAGCGCTCTGTTCCGAACTGTGTCGTGTGGAACAGCCAGCAGAATGGTGTGTGCCCTTTGTGCTCAGAACTTTTCtgccctgcagtggaaaagaggCTATACAGTTGTGTTATATAAGATTTGGTTTCACTGAACTGAACAGAGTGCTGTGGCTCTTCAGGACTGGAGGTTGACACTCCTGTAGTAGATAACGATACCTCTTCTTACACATTCTATATATGAACAGTTGAAACGTGCAATATGAAACTGTGGGAACTGTGCTGACTGATCTGATGGTGCACAGCGCAGTGTTGAGGCATTAGGGCAGAATGTATGTATGGAGAAGGCAGTGGTCACTGCAGAGCACAGGAAGGAGTGAGCCAGTGGTCAGTTCCATCATGCTGAATTTTGGATCAGCGTGGGGAAGGAACAGCTGCAGGCTCCTGATGTCATCTGGTCTCAGCTCAGCCTGAAGGCTTGGATCATATCCCTGTGTGTAAAGAGATCAGTGGTTGTTAACACTAATTGCATTGTGCTGAGGAGAACCCTAGCCACAGCAGATGCATTGTAAAGTTCCATTCCAGTGGTGTCTACCATCGTAGAGTCTAATCACggtgcatctctctctctcgctctctctctcttgctcttaaACTCTTTCTCGCTCTCGCACAGTCTGTCAGAGTGCAGTTCTCTATTCTGTTCACTCTTAACTTTTTGCCATTTAATGTGACTGCATTACATCCTCCCGGGAGGGAAGGAGCCGTCTTCTGTTGAACCGAGAAGCTGTCTCCCGCTACTTGCTAACTCGCTAACTCTGCTGCTGACCTCGGCACCCAGCTCACCTTCAAACGGCGTTCTCGCATAGAGCCTCAAAACCATATGAATAACTGTGACAGAGGAATGCTGCTGGAGAGGAGGTCAGGAGGCTAGAGGACCTCTGGAATGGAGTCGTCACTCTTGCTTATGTCTACTCTGTACAAGCTACACTAGATGggcaaaagtattaggacacctgcttattcattttgtttataccaaaatcaagggtattaaaacagtttatcctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98736 lncRNA upstream 3758 12674986 ~ 12676348 (+) True G73191
TU98733 lncRNA upstream 10377 12663967 ~ 12669729 (+) True G73189
TU98715 lncRNA upstream 38284 12639245 ~ 12641822 (+) True G73177
TU98665 lncRNA upstream 115314 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 115314 12564346 ~ 12564792 (+) False G73146
TU98768 lncRNA downstream 231988 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 231988 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 231988 12947646 ~ 12952320 (+) False G73214
TU98857 lncRNA downstream 382083 13097741 ~ 13098590 (+) True G73288
TU98861 lncRNA downstream 442111 13157769 ~ 13158679 (+) True G73292
XM_015601056.2 mRNA upstream 92563 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA upstream 92563 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA upstream 92563 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA upstream 92563 12568843 ~ 12587543 (+) False fanci
XM_022672144.1 mRNA upstream 132428 12490585 ~ 12547678 (+) True LOC103039298
XM_007228138.3 mRNA downstream 155826 12871484 ~ 12896463 (+) True LOC103043719
XM_007228140.3 mRNA downstream 182127 12897785 ~ 12909061 (+) False LOC103044030
XM_022672160.1 mRNA downstream 184727 12900385 ~ 12909061 (+) False LOC103044030
XM_007228139.3 mRNA downstream 185772 12901430 ~ 12909061 (+) True LOC103044030
XM_022672161.1 mRNA downstream 218794 12934452 ~ 12942962 (+) True rag1
trnar-ucg_4 other upstream 76682 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2597966 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3530687 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5794565 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6141312 6525641 ~ 6538794 (+) True G71682
XR_002650241.1 other downstream 155826 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 1933171 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2175876 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3571018 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5739193 18454851 ~ 18455197 (+) True G74649

Expression Profile