RNA id: XM_022672158.1


Basic Information

Item Value
RNA id XM_022672158.1
length 3359
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC103043208
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12722277 ~ 12871382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGACTCAGGTCTAAGGGCACATGCTTACACTGACAGCATGGCTTCCCAAGACAGATGTACGCTCCCTTCTCAGTGCACGGGGTTACAAAAGTCTACAAAAGAACTCCAGAACAGAGTGTACTTAAAATTCACACAAAAGAAGCTGAAAAGGATCCAGACGCGAGTTATGATGTGAATGACCGAGATCCTGATCCTCAGCCCAGATATACACAGCTGAACGATAACAGACATGGGACTCGCTGTGCTGGAGAGGTGGCGGCTGCGGCTAACAATGGTGTCTGTGGGGTGGGAGTGGCATACAATGCTCGGATTGGAGGTGTGCGAATGCTGGATGGCGAGGTGACTGATGTGGTGGAGGCTCAGTCTTTAAGTCTCAacttacagcacattcacatCTACAGCGCCAGCTGGGGCCCAGAGGATGACGGGAAGACGGTGGACGGCCCTGCCAAGCTTGCCAAGGAGGCTTTTCTGCAAGGGGTCACAGAGggCCGAGGTGGTCTTGGATCAATCTTTGTGTGGGCGTCTGGTAATGGAGGCCGGGAGAAGGACAGCTGTAACTGTGATGGATACACCAACAGCATTTACACTCTCTCCATTAGCAGCACCACTCAGTACGGAAACGTGCCCTGGTACAGCGAGGCCTGCTCTTCTACACTCGCTACAACCTACAGCAGCGGCAATCTCAACGAGAAGCAGATCGTGACAACGGATCTGAGGAAGAAATGTACAGACTCGCACACTGGCACATCCGCTTCAGCCCCTCTCGCTGCTGGCATCATCGCTCTTGCTCTGGAAGCCAAtatgaATCTGACCTGGAGGGATATGCAGCACCTGGTGGTTAGAACCTCTCACCCTGCCCATCTCATCACAAGCGACTGGAGGACCAATGGCGTGGGACGCTTAGTGAGCCACTCCTATGGCTATGGTCTGCTGGATGCGAGTGCGATGGTGGCACTGGCCCGGAACTGGAGCAGCGTGGGGCCTCAGCACAAATGTGTTATCGACATGCTGACGGAGCCCAGGGATGTGAGGAATCACCTGATGTTCAGTAAGAGTGTGGAGGCGTGTTCGGGACAGCCTGACTTTGTGAGTTCTCTGGAGCATGTGCAGGCCAGGCTCACTCTGTCCTACAGCCACAGAGGAAACTTGGCCATCCACCTGATCAGCCCACTGGGCACCCGCTCCACCCTCCTCCACCCCAGGCCACAGGACAACTCCGCCGAGGGTTTCAATGACTGGGCCTTCATGACCACGCACGCATGGGATGAAGACCCTCGAGGAGAGTGGACCTTGGAAATAGAGAATGTGGCTGGGCTCAGTGATTATGGTGTTCTTTCTCAGTTCACACTCTTCCTATATGGAACAGGCTCGAGCGCCACAGACCTCTCTGCCTCTGACTTCAGCAAGCCTTCCAACAACAGCTGCAAAACCTTTGATGCCCAACAGATCTGCATTGAGTGCAGCACCGGGTCCTCACTCTTCCTGCAGGGCTGTGTGAAGACGTGTCCTCCGGGCTTCACATCAGGTCTGCAGCTGCTCAACCTGTCGCTGGAGAACTGGGTGGAACAGTCGTCCGTTCAGGCCTGCCTGCCCTGCCACCCGGCCTGCCTCACCTGCTCCGGCCCAGGGGAGACTGAGTGCCTGTCCTGCCCCTCTCACAGCCACCTGGTGGCTACATCCTGCCTGCGCCAGAACCAGGTGCAGCGCAAGTCTCCCTCTGGACCCGCACTTAATGACCAGAGAGGGGGCGGATTGGACCAGGACCCCGGTCCAGATTTGGACTCAGACGGACCATCGCCCCAGACGGGGCTGTCGTCGCATTTGCCCGTGCTGGTGGCAGTGCTCAGCTGTGCCTTCATTCTGGCCACATTTGCGGCCGTTTTTGTACTGCTGCAGCTGCACTCTGGCGCGGCCAGCGCCCCCTTCTGTCGGAGGACCAAATTGCCCGTGACGGACTCCAGCGGGCGAGGCATGCGAGTGGCCTTTAGTTTTGGCCTGAGCCGTGACTGGATGAACAGCAGGGTGTCTTACCGTGGGATCCCCACCGTGTGGGGGGATGAGGAGACTGCGGGCGGAGTCAATTCAGAATCAGACAGTGAGGAAATGGACTGCAACAGCGAGAAGACTGCTTTTATAAGGACACAAAGCGCTCTCTAGCCACCCGACCCTATTAGACACCCTGCCTTTCACACCTCTTTCTCGTCTTCCTCTTGCAGAGCGGGCGAGTGAGTGAGGCTGGTGTAGCCAGTGCTTCTCTCTTTGCTCTGCTCTGTTGTGCCCTAGGTCCTACTGTGTCCTGGAAGGACTGCTCTGAAGAAGCAGATATgtacaggcaggcaggcaggcaggcaggcttgcgtatgtgtgtgtctgtgtgcctATTCATGAGCCGTGGAGTGAGACATTCAGGTGAGGCAGCTGTTCAGCTGAGACACAGATGTTTGACTTGAATCTCTGATGAATCCCAGCAGGACAGGCTGACAGCGCAGCGCTGAAAACTtccctttattttcacttttaattttCTTAGTGGTTTGAGTCATGAGATTTAGGCGGCTAAAAAAGgatcagtgtgtgtgcgtgtatgaaTGCTAATGTTTTCTTCAGAGCTGAAAAGGGCTGAATTTACTCCGGTCCGCCTTTTATTACTGGGTTTACTAGACTGGATTTATGCACAACATATAGTAGTGAGGAGAGTAATCTGCAGCGAGTCCGCACCATTATTACCTAAAACTGTTCACCAGTCTCAAAATCTGTTTCACACACTGTCTGTGCTGGTCTATAAGCTTTCATTATTACTACGTTATGTCCACACAAATCTGaatatttttgtctgttttggcCTCCCATCcacatgaaattattttttttggtcactAAAAGCAGAGTGTTTCAAAAACACTTTCTGAAACACTGTTTTCAGAGTCATGTGGacgggaaaataaaaaaacgcatGCGTGCTTCTGGTTGAATCTCAAAAACCTGCTTAATCCATATATAAAGTGAACTTAATGTTAGTCACTTACAAATTTTAACATACaagtacaatatatatttaatgagaatTAGATTAGAATTAGAATCTATAATTTCATGATTTGTATAGTACACTACATGGGGAGTAGTGGTAGGAATGGAAGGTATTGAAAAATATTCAGATACGTGTGAACAGGGCCTGAAGAggcatttcattattttaagaaggTAGCCTTGATCAATATCAAAAACAGTGGAGGTAGTGGAGAAAGCCATCTGAGAATAATAGACTCAACAACAATCTGCAGAAGGCCTTAAGTATGAAGATCCAAATGTTTGTAATACTTCACGATGAATAATATCATCTGTTTGATTTCA

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0006508 proteolysis biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98713 lncRNA downstream 97859 12621682 ~ 12624418 (-) True G73176
TU98710 lncRNA downstream 101764 12613606 ~ 12620513 (-) True G73173
TU98694 lncRNA downstream 139823 12578858 ~ 12582454 (-) True G73162
TU98688 lncRNA downstream 147693 12573311 ~ 12574584 (-) True G73159
TU98615 lncRNA downstream 192007 12515554 ~ 12530270 (-) False G73119
TU98799 lncRNA upstream 95298 12861113 ~ 12861628 (-) True G73238
TU98850 lncRNA upstream 223371 12989186 ~ 13088436 (-) True G73281
TU98871 lncRNA upstream 472138 13237953 ~ 13238314 (-) True G73302
TU98894 lncRNA upstream 650842 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA upstream 650842 13416657 ~ 13417462 (-) True G73322
XM_007228127.3 mRNA downstream 47755 12662741 ~ 12674522 (-) True unc45a
XM_007228300.3 mRNA downstream 60470 12658893 ~ 12661807 (-) True gdpgp1
XM_007228128.3 mRNA downstream 70361 12638871 ~ 12651916 (-) True rhcg
XM_022672152.1 mRNA downstream 120036 12587239 ~ 12602241 (-) False polg
XM_007228148.3 mRNA upstream 178638 12944453 ~ 12949439 (-) True rag2
XM_022671890.1 mRNA upstream 1067738 13833553 ~ 13848142 (-) True LOC103022766
XM_007228155.3 mRNA upstream 1095735 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA upstream 1095735 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA upstream 1095735 13861550 ~ 13883555 (-) False slc1a2
TU98709 other downstream 100921 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 157311 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 157403 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 157479 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 946138 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 1776394 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 2995949 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 5111211 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 5216932 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 6173359 18939174 ~ 18940464 (-) True G74791

Expression Profile