RNA id: XR_002650241.1


Basic Information

Item Value
RNA id XR_002650241.1
length 5744
RNA type misc_RNA
GC content 0.46
exon number 16
gene id LOC103043719
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12871484 ~ 12897931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGCAATTTAAAGCAAGAAactcatttaattcattttactcCAAAACATAGATCAGGACttctcaactggtctcagcccagcacccacattttctcatggtcattaagtCGCGACCCAcatttatagaatacaaaccaaaaaaataaatagctttGAGAAATAGCTTTTAAAacctatttaaacatacatatgtaGCAAAGTGAATTTAACAGCATTTTCTAAAGAAACCGAGGAGCAACATGATAACtgactgtataaaaatattacaataaaaagaaatatattacttttctgcatatctctgcattcagagtacactagtaagaaactgtctctgtctctcctttttCCCACTATAAAATGCGAGTACAAAATtagatgaacattttttttgttgtttttccaaGCTGTCTGTGATATATAATACAGTGCCATGCTaacatttggacacacttcTTTTCATccaatatgttttctttttcaattttctgtcaattgttgctgctttttcttcacactATGAAGCTCCAGCTTATCCCAAATCACCCATCTcatttgggtttaggtcaggggattgcaGAGGCCAAAcacccttttttttgtttactacctAATTCCATATGGGCCCCTTAATTGTTTGCatgaatgtattattaatatacaatgtagaaaacaagaaatcaagaaaaacattgaatgagaaggtgtgtccaaacgtttgactggtactgcatcTATGctaaatagcataaaaaagattaCTAGTAGGTATATACAGAAATAGTCACAAAAATTTGAACTGATATATAAACTAATACAGAAGAAGACAGATAAATAACAGTGAATACAGGAGTGGGTTAGTGTAGTGCAAAAAGTCAGTATgcattatgacttttttttgtaactgaGCAGTAGTAGTATAATAATATAGATTCCTATTAACCTGACCTAGCTAGACAACCAAAATGGCCAAGCTTGTTGAACATCAAAGTCCAGCTTATACCGTCTGAAACCAGCTACTAGTGAATGCTGGTCTTGAGTTGGATATTTTTCTTGGATATTCAACTTGATCATCTTTATGTTAAAAGAGAGAATTACTCCAGGAACCAATGCAAATGCAATGCTGTCTGTATAAGAAttactgcattatttatttttcaggaaACACTTGCTTCGAGGTACAGACAAGCTACTGAACCTATTGTAAAAGGTAGACCTACAGTTCTGTCTACTGACATTCTGTGGGTCTGGCCATCAATTGGGTGACCAGCTCCAGTAAATTTGTCTATGGTCCATAATATGAACCTGCTGTCAGCAACTGTTACTTAACTGACAGCTGCGTTTGTGGTTTTGATATGTCTCTGCGGGCATTACTGGAGGATTTGGGGGATCACTATTCAGCAGACTGCAAATACACATGGGGGTATAATTACATTACTCATTAAAAAAGATTAATTAATTGAAGATGGAGGATTAAAGgttacaaatacatgttatttttatagttacttttttatataacagCAATTATAACAGTTAAGCTTATGTTTTAGATAAAAGGCTTTTTACTTTTCTAGATTTTCATTAGTTCATATACTTATTTATAAGAAAAGtggtttaaaactatttaaagtataCAAGTTcccttgagtctctgcacagatcatcttTATACCaggctacatacatctgctatgttcttgctggagtgtgacatGATGTGTACAGGTGAAATGGATTGTGTCTTaaccaacagaaaaaaagaaaaccactgaatgaaaaggtgttactatacttttgactggtactgtatctatgccaaatatcataaaaaagatGTAAACTAATacagaagaagacaaagaaataACTGTGAATATAGGGGTGGGTTAGTGTAAGAATATGCAGGAGTCAATATGCGTTGATTCTTTGTAAATGAGCAGGGGTAGAATAATAATTTACGTTGGTGGAAAGAATAGTCTTGTTTGATTGTAAAGAGCAGTACggcaaaaatgtgttaaaatgaacGTGGTAGTTATATATAGAATAGTAGCTTTATAGAAGTCTTGAGTGCGTGGTTTGTGCCTTTAttgtgattttgttttattattttactattgaGTATTGAGTATCCTTAAAATTTGGGAAATGTGAAATTTCTCTCATATAGCCCCGAGCTCTCGCTAGACGGTGCTGTAGTGTCAGAAACacgagtgtgtttgtgtgtgtgaatgagagtgtgtatgtggctttctctcactctttccctctgtctgcctctctcgCGCGCCCCCCTGAAACGCTCTGGAACAGCGCTCCTACTAACACGGGCCAAAGTTGTCCCGGAATAAGGACAGCACGCATGTGCCGTAAACCCGGATGTAATAGCCTACCGTAGCTCGTTCTCAGAAGAAGAAGGAGCAGCTAATAAACATACAGCTGAGCAGCTGTACAGCACCCTGACTGCTtcacactaaacacaaacacacacgtggTCCAGACCAGAGACAGAGTGCAGGACTAAAGACTAAGACTTTAGCATCATTAGCAGCAGATATTAGATAGAGAGCTCGTGCATGATCTGAGCTAGCCAGTTAACTATACATGTTTACATGAGTTGTagctagtgttttttttctttgtgcacAACACTGTGTGTCTCTACAGTCTATTCAGAGGGTCCGGATGGACTATCACGGTAAAAAGTATGAGCGCGGCAGTAACTGGTCCGAGCCAGAGGTGGTGGAGCTGCTCCAGGTGTGGTCGGACCAGTCGGTCCAAGCCGAGCTGGAGAGCTGTCTGCGGAACCAGCACGTCTTCAAGCGCATCGCCGCGGCCCTGCACGGCAGAGGGGTGTACCGCACCGGAGACCAGTGCCGGGAGAAGATCAAGAAGCTGAAGATCGAGTACCGGCGGATCAAAGAGAACCAGAAGCGAGCCCGCGGGTCTGGCAGAGCTTGGAAGTTCTACGAGGTGATGGACCGGGTTCTCACCGGCCGGCCCGTGCAGCCACACATGCTGCCCCAGCAGCAAGCCCtccaccctggcttactggtcTCCTGCAGCTCCGGCGCGGAGCCTTTCACCTTCACCCGCCTCCCCAACCCGGGAGAGCTGCTGGAGATCAAGCGCGAGGAGCTGCACGCGGAGGACGAGCTGCTGAGCGCAGAGCACGCGCCGCCCGAGCTCATCTACCACATCGGGTCAGAGGACGATGAGCACGAGCTCGAGAGCAAGTCTATCGGGATAGAAGCGGAGGAGCTGGGGATGGGAGACGTGGTCAGGGGGGAGGGacctgctgctactgctacttctgctgctgctgttctagGGAGCAGTTCTCCTTCAGGTTTTAGTGACCACAACATGGCTGGCTCTTCTGGTGCAGGCATTTCCCCAGCAACAGCTTCCATGGTGATTGGAGATGGAGCAATGCATGGTGAAATGGAGAACCCTAAAAGTTCTGACTCATTTCTCCAGAGGAAGCGGAGGAGGGCAGGTAGAGGGCTGGGAAGTGGGAGACTGTTGGAGAGAGCTTTGGCAGATTTCCTGGGCTGGCAGCAGGTGATGGAGGAGAGATACCTGTCTTTGGAGGAGATGAGGCTGCAGCAGGAGACGCGGGCAGAGGAGCGCAGGGGGCAGCAGGAGGAGATACGGGCGCAGCGGGACCGGGAGCATGAGCTGCGCCTGCTTTCTTTGTTCACGGAGGCTTTTACTGCAGCCAGAGGCACAGCAGACACTGCCAACACCAGCGTTAGCACACTTCGTCCAGACCCTATACCTGCTGCTCCCAAAACAGTGTCAGAACCAGCTTCTGTTTCTCCACCTCCCTCTTCTCCACCTCCAGAGCAGGAGCTTCACCCTGCCCCTTCATCAGCCCCATTTAAACCCACCATGCTGAGGGGCCACCAGACCCCACAGAATAGCCGTTACCTGTCCCGCAGAGGGAACTGTATCCGGCAGCACCAGGGCATCCTGCAGGAAGGATACGCACAGTACCAAGCCAACAAGCATGATGAGTACAGCAACCCTAATGGCATAATTAATATGGGAACGAGTGAGAACAAGCTGTGCTTTGACCTACTGCAGGAACGGCTGACCCGGCCAGACATGCTCTACATGGAGCCCTCCCTGCTGCAGTACTTCGACTGGAAGGGCCACAGCTTCCTGAGAGAGGAAGTGGCTGAGTTCCTGTCCGAACACTGCCTCTCTCCAAGCCCTCTGAAAGCAGAGAATGTGGTTGTGATGAACGGCTGTGGCTCTATCTTCTGTGCCATGGCAGCTGTGCTCTGTGATCCTGATGATGCAATCCTCATCCCGACTCCATTTTATGGCGCTATCACAGAGGATGTTGATttgtacagtggtgtgaaactCTACTGTGTTCCTCTTGACAGTAAGGCCAGTGAAGATGATGACAGGCCCTTCCAGCTCACTGCTGCAAAACTGGAGCATGCTCTTGAGAGGGCAAAGAAAGAGGGGGTGAATGTTAAAGCTGTCATCTTGGTTAACCCTCACAATCCTTTGGGAGATGTCTACACGGCTGAAGAGATGACCAGCTTTCTGAAGTTTGCCAAAAAGCATGAGCTGCACGCTATAGTGGACGAGGTCTACATGCTGTCAGTGTTTGATGAGGATCAACCTTTTCACAGTGTTCTCAGTCTGGAGAGGTTACCAGATGTTCAGAGGACTCATGTTCTTTGGGGCCTTAGCAAGGACTTTGCGATGGCAGGTCTGCGTGTGGGTACACTGTACTCGGAGAACAGGGATTTGGTGCATGCTCTGGAGCAGCTGGGCTGCTTTCATGGAGTTTCAGGACCCACACAGCTTCAGGTTGCTCAGCTGCTGAAAGACAGAGagtGGATGAATGAGACATTTTACCCAGAAAACATACGCAGGCTGAAGGAAGCGCATCAGTATGTGGCGTCTGAGCTGAAGAAGCTCGGCATTCCTTACCTGCACAGAGGCTCAGGCTTCTATATCTGGGCCGACTTCAGCAAGTATCTAAAGGAACGCACGTTTGTGGAGGAGCTCTGCATGTGGAGGTGTTTTCTGAAGCACAGAGTGCTGCTGAGCTGTGGACAGGCCTTCAGCTGCTCCTCTCCAGGCTGGTTCCGGATTATCTTCTCTGACCAGCGGCACCGACTCCAGCCGGGTCTGAAGAGAATCAGTGCGGCGTTAGAGGAGCTCCGGGGCTCCAAAGCCCTCCCCAGGTGTGAGAactcaaaagaggacaaacagAAGAgccacagacaaacacagaacaGTGCAGAGAAAGAGggcaaaacagagaaagaaagtacAGCCAACAACTCCTGTACGCCAACAAAAGGGCATTGTGAGGGGACTGGTGCTGAGGCTGGAAGCCTATCATTGGCTGATGAGGACACTGTGGTCATCAACTGCCAATCTTCTTCTACCTCAGAAAGCCTGGACTCGCTCATTGGTACACTAAGGCAACAGATCCAGTcgtctgattggctggagaAAAACAGGCCGGAGCTAGGTGCTGAAGAGGACCCGACCCAGCTGGACGTTTTTAAGGACCTGTTGGACAGGGCCAGGATGTAATGGCACGTTAAAAAGGGCAGAATTCTCAGTACCAAGGCCAGTGGTTTTCAGTTCTTTATACTCTGGAGATGCACAGTAGCGCAGCGTGAACAGGAAGTAAGAGTGAGCGTGCAGGCTTTGCTTTGAGCCCACTGGGGTGGCGGAGTGACGAGTGGGCTCCACTTTCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98736 lncRNA upstream 195136 12674986 ~ 12676348 (+) True G73191
TU98733 lncRNA upstream 201755 12663967 ~ 12669729 (+) True G73189
TU98715 lncRNA upstream 229662 12639245 ~ 12641822 (+) True G73177
TU98665 lncRNA upstream 306692 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 306692 12564346 ~ 12564792 (+) False G73146
TU98768 lncRNA downstream 49715 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 49715 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 49715 12947646 ~ 12952320 (+) False G73214
TU98857 lncRNA downstream 199810 13097741 ~ 13098590 (+) True G73288
TU98861 lncRNA downstream 259838 13157769 ~ 13158679 (+) True G73292
XM_022672155.1 mRNA upstream 155826 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA upstream 155826 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA upstream 155826 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA upstream 155826 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA upstream 155826 12680119 ~ 12715658 (+) False man2a2
XM_022672160.1 mRNA downstream 2454 12900385 ~ 12909061 (+) False LOC103044030
XM_007228139.3 mRNA downstream 3499 12901430 ~ 12909061 (+) True LOC103044030
XM_022672161.1 mRNA downstream 36521 12934452 ~ 12942962 (+) True rag1
XM_007228150.3 mRNA downstream 764878 13662809 ~ 13676841 (+) False ehf
XM_022672162.1 mRNA downstream 771691 13669622 ~ 13677076 (+) True ehf
trnar-ucg_4 other upstream 268060 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2789344 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3722065 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5985943 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6332690 6525641 ~ 6538794 (+) True G71682
TU99159 other downstream 1750898 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1993603 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3388745 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5556920 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 6184885 19082816 ~ 19085556 (+) True G74832

Expression Profile