RNA id: XM_007228139.3


Basic Information

Item Value
RNA id XM_007228139.3
length 3055
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103044030
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12897785 ~ 12909061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGGCGGTTTGATCTCTAGATTTTACTCAGTTCTCACGGCTCGCTGTTGTTAGAGTGAGACAAACTTAGACTAAGAAAGTCTgaagtacatattttatttttcaacatGTCTAGTTATGACTGATATTATAATGATCATATAGAAAACAAGTGATCTGAGACTTCAGAAGGCCAGTGTGGGGTCCCTGTGCtcatttttattcagattttgaCCCGTCTGAACATCCCACTCGCTGCAGCCCACCTGTTTATAAATGTCAAAACAAGTCAGAGTTTAGGCTTTACTAAAAGAGTTACTACAGTATGAGCTGAATCAGTACAGTTTCACTCTAAAAACCTCAGTCTGAGTCAGGTGGGGTTCTGGGGGAATTTAACcacactgtttgtgtgttttcagaGTGGGGGAGTTTCCACCCACTGCAGGTCTCCACAGTAGGAGGGAAATCTCCGGTGTCGtattgctctgtgtgtgtgtgtgtgtgagggggaaATGAaagctaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcataaaTGTTCGTCACCTTCTGTTTCACTCTCACTGTATTTCATGCTTGTGTGTGATCGTTGTCAGATCGCTCTATTCTGTGTGTAGTGTAACCTGCCTGGGCTATCACAACACTTACACGCAACAGTTTACTCCAACGTGATTCACCTTGAGGTAAGACAAACTTTATAtatcttttgttgttttttttttttttagaggaatGCAAGAGACAGACCTATCTTCATATCTGGTCCTTGATTCCAGTGTAGACTCCTGGACATAGTAATCCTATCCTACAGTAGATGTAACTCTTTGCTACCAATCGAttacattaaacattattttaacttCTAGTGAGAATAAATAATCAgcataaaaagtaatctaccttctgaattCGACAGTAGTAGtgtcaccaggctctgtaagGTGAGTGGATTACAGGAAGAACTTGCGATAAAACTTTGcgataaaaatacatttacgtgTTGGTTTTCAGATTAATCATGCTTGTCATCGCATTAACATTAACAGCTCTGATAGAACCCCATATCTAATAAAGTGTGAGGAACCTTTACACATCTCcaaccattttaaaaatcattactTTAGATAAGATAAGATCAAATAAGATAAAACTATATTGATCCCCCAAGGGGGAAATGAACTTGTTACAGCAGCAGGACCAAATCAAACTCAAAGTGCATACCCAGtaactaaaaaaagtaaattttattttaataaaaagacaaaGGGCAAATTGTGCAAGCAGAGGGAAACATACCAATAActaacataatttaaaacagacaacagcaatctgaataataatatacataagaACCAAgtggaaaatataaaattaaatgtattactgTAGGCTATTATTGTACAGTCTCACTGCTGATGGGAGAAAGGACCACAAGGAAGGAACCACAATTGGCTGAAGTAACTATTTGTTGCACCTTTATTTGGAAAACGTCATGTTGGATATTCCCCCATTCTCATTTTACCGTGTGTTTGGATTGTACTGTGCTGTACTGGGCACTGTAATCCTGATTATTAGAAGGGATTATTTAGCAAGTTTAACGATTTATGCAAATGTTTCACCTTTCTCACATATATTCCTACTTATCTCTCTTTCCTCTGTTTTAACTTGTTTCTATTCAGAAGAAAGAGTGATGAAAGGACCAGAGCTAAAGGATTCCACAGGCCGCTTTCGATTTGCTCAGTCATGTCTGGGCCTGGCGGGCTGCTTGTGTATCAGCTATGCTGTTTGGACGCCTCATTGGCTGGATGAGAGGGGCCTGTGGGTGAACGGGAACGAGTCGAGTCCAGACGACAGCTGGACACAGGGACAGGGCATTGAAGGTCTGGGGGCTCAGAGGGTGTTTTCTGCTCTATCGTTCATCATGGCTGTGAGCTCGGGAGTTCTGTGCCTGGTCTTCGCTTTCTGCTGGACGTCCCGGACCGTGCGCTCTTATTCCAACACACGCTCTCTACTGATGGCAGGCCAGGCACTCTACCCCACCATGCTGCTACTCATCACACTGGTGCCTACTGGGTTCTTCTTTCTTCTCAGCTGGGCACTCTTCACCAATCAGCACATCGCTGAAATCAGAGTCGACATCACGCGCCTGGGGTTCTCCTATTGGACGGGCATGGTGGGCTGGGCTTTGCTGTTAGCTGTGCTGCCGGTGGTGTTCCTGGTGGAGCAGTTTGTGGTGCCGGACGTGCTGCCGGAGCTGATGAGGCAGGCCGAGACGTGGTGGAAGGCCCCTGAGGTGGCTTACGCTCGCTCGTTTAGCGAGAGCTTCTACAACCACAGGGGGCCGAAACTTGACAAGGAGTTCAATAGGTACCTGTCAGTGCCCTGAGAAGGAGTGTAGCGGCACAGGCCGTGTGTCAAATCCTGCTATTGACTCAATACCTGCACCTACTGCTCCTAACAGCCGAACATAAGGCCTGAGCTCTGGTGGAAGGCTTGCAGAAGCTCGGAAGGTCGCGGATGTGGATACTGCACTTTAGCCGAGAGCTGTTGAGGCCTGCCAGAGCCTGATGAGCAAAGGAATGGCCTTGATTTGGGCCTATGAACTGATATTAAAGCCTGCTGAAAAAATACTAAATGTTTCCCactttcagaaagctgtgtaaacaCTACCTGCATAATGACAAGACTACTGTTTACTGTTACTGATGTACACTGGATCACTTTCAGGCTGCATTTAGAATTTAATGCAGtacttatttagattttatgcaGAACAATATGACAACATCTTAATACAATTGTAGACTAAGGAATGGAGTGAACAAAATTCATGTCAGGCAGAGGACGATCATCATGTATTCATGTTGTAACAGCTCCCTCGTGTGGTTATGCCATGTTACTACATTGTTCAAGTTACTACTCGGTATTACAAGTCAAGGTGCTTGTAGTCACATATCTCATATCTGATCAGCCCAGGTTGAGCTTGTTTTTGTTTGGCATGTTGTTgtcattacaaataaataaaaaggtaaataaataaataaccaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98736 lncRNA upstream 225082 12674986 ~ 12676348 (+) True G73191
TU98733 lncRNA upstream 231701 12663967 ~ 12669729 (+) True G73189
TU98715 lncRNA upstream 259608 12639245 ~ 12641822 (+) True G73177
TU98665 lncRNA upstream 336638 12564133 ~ 12564792 (+) True G73146
TU98768 lncRNA downstream 38585 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 38585 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 38585 12947646 ~ 12952320 (+) False G73214
TU98857 lncRNA downstream 188680 13097741 ~ 13098590 (+) True G73288
TU98861 lncRNA downstream 248708 13157769 ~ 13158679 (+) True G73292
XM_007228138.3 mRNA upstream 4967 12871484 ~ 12896463 (+) True LOC103043719
XM_022672154.1 mRNA upstream 185772 12680111 ~ 12715658 (+) False man2a2
XM_022672161.1 mRNA downstream 25391 12934452 ~ 12942962 (+) True rag1
XM_007228150.3 mRNA downstream 753748 13662809 ~ 13676841 (+) False ehf
XM_022672162.1 mRNA downstream 760561 13669622 ~ 13677076 (+) True ehf
XM_022672163.1 mRNA downstream 760561 13669622 ~ 13676841 (+) False ehf
XM_007228153.3 mRNA downstream 785367 13694428 ~ 13765050 (+) True pdhx
XR_002650241.1 other upstream 3499 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 298006 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2819290 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3752011 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6015889 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 1739768 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1982473 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3377615 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5545790 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 6173755 19082816 ~ 19085556 (+) True G74832

Expression Profile