RNA id: XM_007228148.3


Basic Information

Item Value
RNA id XM_007228148.3
length 3084
RNA type mRNA
GC content 0.45
exon number 2
gene id rag2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12944453 ~ 12949439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTGCAGTTTGTACTGTAAACTCTAAAATAACTAACATGTATCCCCAAAAGAGTGATTTGGAGAAGCAGGTTCTTAACTTTGAACGGAAGTTATATAATAAGAGTTCCCCAAATAAGAGACGTGtttaaacaatgaaaaacacgTAAATGCAAAAACAGCAACATGGGCCCTAGAATTCTATCTCACATAGCTTTGTTATTGTGAATCTGTCTAACAGCCCAAGTTGTGCACTGTTGAGCTGTGATGACTGTCTTGTTTTCATTCAAACGttgttgtggtgtgttttgcGCAGACACCTGCTGAAGATAACGCTTCACAGACGGTTAACCTCGATATGAGACTCCCCTCAGCAATCAACCAGCTCTCAGAAGCTCCACATCAGCTAAGAACCATCACTCTAAACGTCTAGACTAGCTGTTATTTTGTATTAGCACATTTGGGATAACTTCTGCAAGCCAGCAATAAACAGCATTTGGACATAATAGTATCAGAGCCATCAACACAAGAATGTCCTTGCAACATCTGACTGCAATAAACTGCGCTGGCATTCTTCAACCAGGTTGCTCATTGTTGTACCTGGAAGATGAAGTTTACCTCTTCGGTCAGAAAGGCTGGCCCAAACGCTCCTGTCCAACTGGCATCTTTGGTGTACGAATCAAGCGTGATGAGCTCAAACTGCGTGCCATCTCATTCTCCAACACTTCCTGCTACCTCCCACCTCTGCGGTATCCGGCAATCGCTCGCCTAAAACCTCACGATGGGAGCCCTGAGAGTTACCTCATTCATGGTGGTAGAACACCCAATAACGAATTGTCCTCGAGCCTTTACATGCTTAGTGTCGACAGTCGTGGATGCAATCGGAAGGTCACGCTGAGAtgtctggagaaagagctggtGGGGGAGCCTCCAGGTCCTCGGTATGGTCACACCATTAGTGTAGTCCACAGCAGGGGGAAGACCGCCTGTGTGCTTTTTGGAGGCAGGTCCTACATGCCACCTACTGAGAGAACCACAGAGAACTGGAATTGTGTGGTGGACTGTCCGCCCCAGGTGTATCTCATTGACCTAGAGTTTGGCTGCTGCTCAGCGCATACCCTCCCTGAGCTAACAGACGGTCAGTCGTTCCACTTGGCACTGGCTCGAGAGGACTGTGTGTACTTCCTGGGGGGCCACATTCTCTCCACCGACTGCCGACCACCTCGACTGTTCAGGCTGCGTGTCGAGCTTCTTCTAGGCAGTCCATTGCTCTCCTGTGAGGTCTTTAATGAGGGTCTATCCATCACAAGTGCCATTGCAACTTCTGTAGGCTCTGCTCATGAGTACATAATCCTTGGTGGCTACCAGTCAGAGTCCGAGAAGCGGATGCAGTGCACGTACGTTGCCTTAGACGATGTTGGCATACGCATGGAACCTCGAGATCCACCGCCATGGGGCAGTGAGATCAGCCAGAGCCGCACTTGGTTTGGTGGAAGCCTGGAAAAGGGTAATGCTTTGATCATTATTCCATCAGAGGGAAATCCAGCACCTCCAGATGCGAACTACTGCTACCAGGTCAGCTTCCGACATGAGGAAGATGCTGAAGATCCAACGCAGACCTGCAGCCAAGAGTCCACAGACTTTGAGGATTCAGCTCCTCTAGAAGATTCAGAAGAACTCTACTTTGGGCGTGATCCCAATGAGATGGAGTTCAGCAGCGATGGGGAAGGAGACGCCTACAACGAGGATGACGAGGAGGACGAATCTCAGACTGGTTACTGGATCAAGTGCTGTCTCTCCTGCCAGATAGACATCAACACCTGGGAACCCTTCTACTCCACTGAGCTCACCCGACCGGCCATGATCTTCTGTTCCAGAGGGGAAGGTGGACACTGGGTCCATGCCCAGTGCATGGAGCTCCCTGAGAACCTACTTCTCCGCCTCTCTCAGGACAACAGCAAGTACTACTGCCTGGACCATGGAGGTCCTGCCAAACAAGAGATGACCCCACCACGCCAGATCATGCCTCTGAAGAAGGTTCCAATGAAGATAACGCACCGCAAAGCCCCGATCACACTGAAGATGACTCCAGCCAAGAAGAGCTTTCTTAGGAGACTGTTTGACTAAGCAATTCTTGCTTTACTGGTCTTTTCAGAACTGTTACTATAATTATGTGCTGCTTGCTTATAATACACATAGCTATTAGCTCTATTCATATAAATATCTGCAATTATGTGTCCTTTGCTTATAACCTATATTATCACACATAGTGCTACTTGCTAAGTGCTTTTAACTTGAGTTGCTGTTGTACTGTAATAATTGCAGTGTGACAGAATGAAAGctcagaaatgtattttatgtttaaagtaaaattCGATCTAACAATGAACAGCATTTCAAAGCCTCACTTACATGCAGGGAACTGTTTGACTAAGCCATTTTCACTTCAGAGCTGTTAATATGTGTTACTACGCTTATGTGCTATTTTCTAAGAATACCTATACCAATTATGCCTATAAATATCTGCAATTATCTGCTCTTTGCAGAACACCCATATTACCTATGCTTTTAATACTTCTAGTGCTAGATGCTAAAGGCCTTTCAGGAAAACAGAAAGTACTACTGCCGTGACCTCGGAGGCCCTGCCAAGCAAGAGATGACCCCACATGCCACACAATGCCTCAGAAGGAAGTTCCGATTGAAATAAAGCCCCACAAAGGGCAGGGAAAAAAGACTGTTAATGGAATTTTGTTCTACTGACTACTTATTAGAAATACCTGCAATTAAGTGCTCTGTGTTCAACACCTATATTATTACTTATAGTGCTCCTTTTGAACTCCATCAGGCAGCTGAAAATAACtgttaaattactaaaatgatGTACTATATCCTGTACTAATACCCATaccaataatacatttaaatacctgCTATGAAGTGCTCTTTGCAGTACACCTATATTACctttaatgttaatttacatttattgctTATAATGCTACTTGCTAAATGTCTTTAACTTGACTTGCTGttgagtttgtgttttttgatgGCTGTTGTTATGAAGAATGAAATCTCaggaatgtattttttgtttaaaaataaa

Function

GO:

id name namespace
GO:0033151 V(D)J recombination biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG:

id description
K10988 RAG2; recombination-activating protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98799 lncRNA downstream 82825 12861113 ~ 12861628 (-) True G73238
TU98713 lncRNA downstream 320035 12621682 ~ 12624418 (-) True G73176
TU98710 lncRNA downstream 323940 12613606 ~ 12620513 (-) True G73173
TU98694 lncRNA downstream 361999 12578858 ~ 12582454 (-) True G73162
TU98688 lncRNA downstream 369869 12573311 ~ 12574584 (-) True G73159
TU98850 lncRNA upstream 39747 12989186 ~ 13088436 (-) True G73281
TU98871 lncRNA upstream 288514 13237953 ~ 13238314 (-) True G73302
TU98894 lncRNA upstream 467218 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA upstream 467218 13416657 ~ 13417462 (-) True G73322
TU98957 lncRNA upstream 879279 13828718 ~ 13830757 (-) True G73371
XM_007228136.3 mRNA downstream 73071 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA downstream 178638 12722277 ~ 12765815 (-) False LOC103043208
XM_007228127.3 mRNA downstream 269931 12662741 ~ 12674522 (-) True unc45a
XM_007228300.3 mRNA downstream 282646 12658893 ~ 12661807 (-) True gdpgp1
XM_007228128.3 mRNA downstream 292537 12638871 ~ 12651916 (-) True rhcg
XM_022671890.1 mRNA upstream 884114 13833553 ~ 13848142 (-) True LOC103022766
XM_007228155.3 mRNA upstream 912111 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA upstream 912111 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA upstream 912111 13861550 ~ 13883555 (-) False slc1a2
XM_022672165.1 mRNA upstream 970734 13920173 ~ 13964026 (-) False pamr1
TU98709 other downstream 323097 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 379487 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 379579 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 379655 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 1168314 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 1592770 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 2812325 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 4927587 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 5033308 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 5989735 18939174 ~ 18940464 (-) True G74791

Expression Profile