RNA id: XM_022672163.1



Basic Information


Item Value
RNA id XM_022672163.1
length 903
RNA type mRNA
GC content 0.52
exon number 8
gene id ehf
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13662809 ~ 13677076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ATGGTCCTTCATAGCGGCTGCAGCATGAGTGCCAGTACCATCCCTGCCAGTGTGAGTGCTGAGAACCAGCTGCCTGCCTCCTGGAGCCCCCACTACAACTGCCCAGATGTTTCCATGATGACGTCTGGCTACGCTGGACGACTATGGTCTCAGGACCTCCATCCACAGTACTGGTCCAAATATCAAGTGTGGGAGTGGCTTCAGCAGATGCTGGACATGCACCAGATAGATGCCACAGCCATACCCTTCAATAACTTTGATCTGGATGGGAGGCAGCTGTGTAGCATGACCTATCAGGACTTCACCCGCCTGACTGGATCCTTCGGGCCTATCCTCTACCAGAGTCTGACTGACCTCAGTCAGTCCAAGTGGACCGGTCAGTATGGCTCTTCAGCAGATATGTTCACATCAGGGGATATTAAAACAGAATTAGATGATCTTCCTTGCACAATCTTGTCTTTCAAGGAGGAGCCCAGCTTTTACGCCACTTCAGAGCTTTTTGACATTAAAACCCCATTTCAACCGTCTACCATGATGACCTCTCCAGCCCCCTCAAGTCCCGACACCAAAAGGTCCCACAGTCGTTCCAACCAAGTCAAAAaacacaaCCCTCGTGGGACCCATCTGTGGGAGTTCATACGCGACATCTTGTTGAACCCAGAGAGGAACCCAGGCCTCATTAAGTGGGAGGACAGGTCCGAGGGGGTGTTTCGCTTTCTAAAGTCGGAGGCAGTAGCACAGCTCTGGGGCAAAAAGAAGAacaacagcagcatgacctacgaGAAGCTCAGTCGAGCGATGAGGTATTACTACAAACGGGAGATTCTAGAGCGTGTAGACGGGCGCAGGCTGGTCTACAAGTTCGGAAGGAATGCTCGTGGTTGGAGAGAAACTGAGAAGTGA

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98910 lncRNA upstream 31920 13637016 ~ 13637702 (+) True G73337
TU98905 lncRNA upstream 159384 13509756 ~ 13510238 (+) True G73332
TU98870 lncRNA upstream 431410 13237960 ~ 13238212 (+) True G73301
TU98867 lncRNA upstream 443667 13225671 ~ 13225955 (+) True G73298
TU98861 lncRNA upstream 510943 13157769 ~ 13158679 (+) True G73292
TU98939 lncRNA downstream 91284 13768125 ~ 13768360 (+) True G73354
TU98947 lncRNA downstream 114489 13791330 ~ 13794158 (+) True G73361
TU98944 lncRNA downstream 151878 13828719 ~ 13830765 (+) True G73359
TU98991 lncRNA downstream 245760 13922601 ~ 13923296 (+) True G73404
TU99013 lncRNA downstream 326231 14003072 ~ 14003426 (+) True G73416
XM_022672161.1 mRNA upstream 726660 12934452 ~ 12942962 (+) True rag1
XM_007228140.3 mRNA upstream 760561 12897785 ~ 12909061 (+) False LOC103044030
XM_022672160.1 mRNA upstream 760561 12900385 ~ 12909061 (+) False LOC103044030
XM_007228139.3 mRNA upstream 760561 12901430 ~ 12909061 (+) True LOC103044030
XM_007228138.3 mRNA upstream 773159 12871484 ~ 12896463 (+) True LOC103043719
XM_007228153.3 mRNA downstream 17587 13694428 ~ 13765050 (+) True pdhx
XM_022671916.1 mRNA downstream 117572 13794413 ~ 13828422 (+) True cd44
XM_007228159.3 mRNA downstream 331791 14008632 ~ 14011720 (+) True fjx1
XM_022672166.1 mRNA downstream 401171 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 561198 14238039 ~ 14389321 (+) True ldlrad3
XR_002650241.1 other upstream 771691 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1066198 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3587482 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4520203 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6784081 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 971988 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1214693 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2609835 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4778010 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5405975 19082816 ~ 19085556 (+) True G74832

Expression Profile