RNA id: XM_007228155.3


Basic Information

Item Value
RNA id XM_007228155.3
length 6198
RNA type mRNA
GC content 0.41
exon number 11
gene id slc1a2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13861550 ~ 13909603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCGCTGAGGGCTGGTcttcactgagagagagagaggagtagagGAGGGAGTGACTTCCTCGGTGCAGTAGTACTCCGTGCAGTGTGGGACTGCTGAGTGAGCGGAGCTCCGCGGATTTTTAcctcagagagaaagacagacagagagagagagagacaggggccCGCGTGCTCTGAGCGCCTCCTGCACATCTTCAGTCCTGCCTCTACTGTAGTGGATGCGAGAGCCCAGACCACCACCGACCACCGACCACCAAACAACACCAAACTTGACTCCTCCGGTTTTCCTCCTAACAGGTGTATAACCGAGAGCCAACAGCATGCCTAAGCAAGTGGAGGTGCGAATGCACGAGAGCCACCTGGAGCCCATCGAGGCTGCCCCACGCTCAAAATGTGCCCTCATCTGCCAGAAGATGCGCAAGAACCTGCTCCTCACACTCACTGTTCTGGGTGTGATATTAGGAGCAGTGTCTGGTATGCTCCTGCGTGTAGCATCTCCTATTGATGACAACATTGTCATGGTTATTGCATTCCCTGGAGACATTCTGATGCGGATGCTAAAGATGCTCATCCTTCCTCTCATCATCTCCAGTTTAATCACAGGTCTTGCGGGTCTGGATGCCAAGTCTAGTGGCCGTCTGGGTACAAGAGCAATGGTTTACTACATGACCACTACTATAATTGCTGCCATTCTGGGAGTAATACTGGTGTTGATCATTCACCCTGGCAACCCGAAACTAAAGGAAAACCTTGGCGAGGGACTCCAAAACGATGACGTCTCCAGTCTTGATGCCTTCTTTGATCTCATCAGGAATCTCTTCCCTGAGAATCTGGTGCAGGCTTGCTTCCAGCAGATCCAGACTGTTGTGAAGAAGGTTGAGGTCCAGCCTGATTTTGATGACAGCAACAGCACCATGGATGAGTTCCTCTCTGGAGCCACTAAGCCTCCTCCCATATTCAAGCAAAAGAAATCCCTGCAGTTCAAGAGTGGAATGAATGTGCTGGGTCTGATTGGATTCTTTATTGCCTTCGGTATCTGCATGGGGAAGATGGGAGAGAAGGCAAGGCTCATGATTGAGTTCTTCAACATCCTGAACGAGATTGTGATGAAGCTCGTCATTATGATTATGTGGTATTCTCCCTTCGGTATTGCCTGCCTCATCTGTGGAAAGATTATCTCCATCAAAGATCTGGAGGTGGTGGCCAGACAGCTGGGGATGTACATGATCACAGTCATTGTCGGACTCATCATTCACGGGGCTATATTCCTACCTTGCATATATTTTGCCATTGTGAGGAAAAATCCCTTCACCTTCTTCATGGGGATCTTCCAAGCCTGGATTACTGCCCTGGGAACAGCTTCAAGTGCTGGAACTCTGCCTGTCACCTTCCGTTGTCTGGAGGAGAACCTGGGCATTGACAAAAGAGTAACTCGCTTTGTACTCCCTGTCGGTGCAACAATCAACATGGATGGAACTGCTCTTTATGAAGCTGTAGCTGCCATCTTCATTGCCCAGATGAACGGAGTTGTGCTGGACCCtggccagattgttacagtcaGTCTTACAgccacactggccagtgttggAGCAGCCAGTATCCCCAGTGCAGGACTGGTAACCATGTTGCTCATTCTGACGGCAGTGGGACTGCCCACTCAGGACATCAGTCTGCTGGTAGCTGTTGACTGGCTTCTGGATCGTTTCCGTACCTCAGTCAATGTGGTGGGCGATTCATACGGTGCTGGAATCGTTTATCACCTGTCGAAGGCAGAGCTGGAAGCCCTGGATGCCCAGCACGGGAAATCCGATGACATTGAGATGATGACCAAGACGCAGTCCTATTACGATGACCTCAAGAACCACCATGAAAACAACTCCAACCAGTGCGTCTATGCCGCTCACAATTCAGTCTTGGTAGATGAATGCAAGGTAACCTCGGCGGCCACGAATGGCTCAACTGCGGAGTACACACTTGTTGAAGAGGAACCACGGAAAAGTGATTAATGTGACCACACAGACACCCTGTGTTCAAGCCCCCAAGCTTTCTTATTTTgcggaagaaaaagagagggagagaaagaaaaaaaaacactaaaatcatGCACACAGAACAAATGATGGGTTTTGTAGTTTAGTCTTCTATTATTCCCATTACAGTTTGTTTAACAACCTGTTTGACTGTCTGAAATAACTTGTACTAATGCTAAAAAAGGGTTAGAATCACACTGTCTGATAGAGCACTAACATGTGCCTATGAGCTAACACTTGCGCAGCGGATTGCAAGGCTTTGGAGGGTAAAAGGAGAGATGATATACAATGCAACTTAAATTATTCTGATGgtaatatatactatatgcaTGCTGTTTATTTCAAAACTATGGTATGTAGTTTTGGAGTtttggggggttgggggggacGATGAATGCGTTTAATGGCGTAGGAGCAGAGCTTTGAGAAGGTAGGGAGAGAAGACAAATAACCCAGCAGTTAGTTCAGTGTGAACTgaatgctaaatgctaagtCTGTGCAGAAGCCAATACCCTTACGGTTCATATTCTCCTCTTTATAGCAATAGTCTAGCAATTTACTGTACGGTTTACTCTCCACGACCTCTGACCTACCTGACACAGCCTGCTAACAACACATGTCCTCTCAGAGAGCATCTACAGTCCCCAGTGACCTGCTGGGGGATCTGGCTACACATGTAGGGCAGTAATATAGGCAACTGCACATGATCAAAGGTCGTAAAAGCACAAGCCATGTTAAAAGACTGAAGACCTCCCCCCTCCCTTCTGAATCGGAAATCGTTCAACCACTTTTTCCCTTTTCTCTAAGGGGCCTAGTGGgcttctttgatttttattGATAAATAAGAGAACTAATGGGCAGGGTTTAGGATTGTTTTAGTGTAGCGTAGGTGAGACTAAGGCATAAATGCACATCAGAGTATGGACCaaacaagcagcagcagcagcagctcagcctACAGCTTCATTGACATTCACTGAAATTAGCCTGTTGGTTGATTAGCCGACTCTATTTTGAGCCAATTCAAAGCACAAGAGCAGAGCCTAATGAAGGACCACTCAATACTGACAATTAGAGCATAATTCTGAAAAACGATGGTGATTATCTCAGTATTTTTTAAAGGCGATGATCATATTTTAATCAATTTGCTTAGTTTGAAGGTTAATTATTCACATTTTAAGTTATGGATTTGGCTTCCTTGGTGAAAACACTGCAACTATTCTGGCATGAGGATACATCTCCAATTTCATGTGCCCAAAATTCACTACTCTAAATACTCACATGAGAAATTCTCAATCAGAATCAGCACATTTTTCTCTAATCTGTGGACTGTAGAATGTTAGATACTcaggcaaataaataaaaatgcactcaTTATCGTCAGGGAAGACATTCCTAATGCAGGCGGTttgaagtattttatatatgaaGCCCTCAGAACATGCTGGAGAGTAATTGTTTACCTGTTTACAAATTCACAGTGGGTTTACAGATTGCCAAATGCCTATTGCCTTTCTATGTATAAAAGCTTGCACTGTTTTATATTGGCTTTCTCGCACTGTTTATCATTTATccacgtaaaaaaataaaactttttttttcctgttaccTAAGAAAGCAAGCGTATCTTCCCAAAACATTTGAAtcatttgaaaaagaaaaagcacacATGTTAAGGGACAAGGTTAAGGCTTTTAATACATTCCAGTTCAGATTACCTTGGCTTGTATCCTTTTTCAAAAGCACACATCCAAAACAATACAGAACAATCATAAAAAGTAATATAACGTATCTGTTTATGAGGACAGAAAGGAGGAAAGTGAACCCAGAAGAGAACAGACAGGAGTGCAAAAGTGAGTTGCtctagtgataaaaaaaaaaaaaagaaatgtcccAGAGCCCAGTGTGTATTAGCGTATTAGTGCCACCTGCTGCTCACCATATCTACACTACTAGCACATGACTGTTCTGGCAGCCCAAATATGCTGCAATACTTATACCTATATTGACCTATATTGTCAAAGACCGACCAATGGCAGGATATACCTCTACGAGTTATAGTCACCATCACCAGGAATCACAGGAGCTGGCATGGAACCTATTGCTCAATTAGTGGACAAAAGTTACGgcaatgaaaacacacacaaaacatacacacaaataataCATAAGCACATTCCATAGCCATGTGTATTCCTGTTTAAGATGCAAGAATGGATGAATAGacagatgaatagatggatggatctTATGAATTTTCTTGCTGACCTCCTTTAAACACTGCCTTGCCTCTAAAGCATTAACCAGTagacatacataaatacatacatctGATTGTGAGTGTCCATTCTCAAAAGCTCATTAATGTGTTCTTAGAAAGCGTATCACTCACATTCATAGCACAAAGTTCATAGTTTAttgctttttatatataatttttattttattttaatttttaaatcccCAAAATGTATGGCATTTTATTTTacgacaattttttttttaatgaaatataaagCCGCTTTGTGAAGACCACCAGCATAAACGCACAGTTCATTTATGTATtgatatttcactgtattgcTTGGGAATCATCACTGTACCCcagcactgtatttttattttcttttttttttctttcttttttttttctttaaaatggaTATTTCCACATTCCCCAaacattaaaattttataaGTATCTAATGTGACCAGCTATGAATGGAGATGGATATTAATCCAGAAGCAGACACCCTGTTTGCAAATGGACTGACAAGCCAGATTtgagctcactgttacagaaccATGGatgtttcattgtttttcacCAGTTTTTCTTAAACAGCATGAATTGAAAAAGTGCCTCCCTGCACTTTGTGTACATATTGTAGGTaacagatttttcttgttttcttttatttttcagtgGGGAAACATGTAGTGTTTAATTGCGTgaccatttctcttttgtaatCATATAGAAATGTATCTTCTATGTAATGCGTAAACAAAAGGAAGTAGCGTAGGTAATGTATAGAGACGAGTGTAAtaaattgtttggttttaagCTTAAATAGCTGCATTTAGCTGTCTCACATAAATGTTTCATATCTGATATATATCCTTTTTGTATCTAATGCAAGTTTTTGAATGTTTATTccctacagaaaaaaaaatcatgtcagTCATGTGTGCATTCGTTTTCattgtacataaatataaatatatatatgatttactCTGTGAAATTGCAATGcggaatgttccagatgtttcatcGACTCTTACTTGGGGAATTAAAACGGAAGGGTGGAAAGGGACGGAGGCAGGGAACAGTTTTAATGCTGTAGGAACGTGCTTTTGGTTGGGAGTGCCCCTGATCTATATGTGGATATTgttataaaattaaatgttcGTATGAAATTTGATCTAAATCTGCTTACATGTGTAAAATTGATCAACaaattaagtattaagtattaagtatgGCCATTTTGAGCAAGTTGACTGTGTCCCTGTCATGTGCTCTACtactttctccttttctgtgTGATTTCTGCTGCATTAGCTGCTACTCACATATCCATTAGAGAGCTGCTCGTAATACATTCTGTACTATAAGTCCACACACTGTTTTTCTTCCAGAAACCATGAACGAAATGTAGCCAAACTTCTCAAACCTCAGTTCTctgctctcttgtttttttccaggtatTATTTTCTTCTCATGCAGATATAGACATAGGCACATAGACAAACTGGCCCCTTTCTACATTTGTTTCTTGTACAAGTTCAGAGATATGTACATCCAAACAGTCTCGTAAGTACTAGCTACACAATTAtccaatttattttattcagcattagtgattttttttttattttttattttattaagtttaaaACATCATTAGTAGATTGAATAACCTCGATCACCTCTCACTTCTGGACCCATCTGTTCTGTTCCTAAATTCCTCTCATCCTTTAtgatgtttcttttcttttgatgtaaaaaaaaggagggagtaaaaaaaataagcaaagaaatgaagaaaaatgaaTAAGTAAATACATGTGGAATAAAAGTATGTTCATACATATCAATAAGTGTTGTACCATTGGTGTACATACAACTATGATAACtaataaatgttgattcatAACTAA

Function

GO:

id name namespace
GO:0008345 larval locomotory behavior biological_process
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05613 SLC1A2, EAAT2; solute carrier family 1 (glial high affinity glutamate transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98957 lncRNA downstream 30793 13828718 ~ 13830757 (-) True G73371
TU98894 lncRNA downstream 444088 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA downstream 444088 13416657 ~ 13417462 (-) True G73322
TU98871 lncRNA downstream 623236 13237953 ~ 13238314 (-) True G73302
TU98850 lncRNA downstream 773114 12989186 ~ 13088436 (-) True G73281
TU99027 lncRNA upstream 97149 14006752 ~ 14007149 (-) True G73429
TU99030 lncRNA upstream 128466 14038069 ~ 14038368 (-) True G73432
TU99032 lncRNA upstream 160896 14070499 ~ 14072038 (-) True G73434
TU99102 lncRNA upstream 367076 14276679 ~ 14277106 (-) True G73491
TU99124 lncRNA upstream 558019 14467622 ~ 14468141 (-) True G73509
XM_022671890.1 mRNA downstream 13408 13833553 ~ 13848142 (-) True LOC103022766
XM_007228148.3 mRNA downstream 912111 12944453 ~ 12949439 (-) True rag2
XM_007228136.3 mRNA downstream 990168 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA downstream 1095735 12722277 ~ 12765815 (-) False LOC103043208
XM_007228127.3 mRNA downstream 1187028 12662741 ~ 12674522 (-) True unc45a
XM_022672165.1 mRNA upstream 10570 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA upstream 10570 13920173 ~ 13964026 (-) True pamr1
XM_022672168.1 mRNA upstream 481082 14390685 ~ 14460388 (-) True LOC103024229
XM_007228165.2 mRNA upstream 632593 14542196 ~ 14545536 (-) True LOC103025073
XM_007228164.3 mRNA upstream 641269 14550872 ~ 14554955 (-) True cib1
TU98709 other downstream 1240194 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1296584 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1296676 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1296752 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2085411 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 632606 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1852161 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3967423 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 4073144 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 5029571 18939174 ~ 18940464 (-) True G74791

Expression Profile