RNA id: XM_007228159.3


Basic Information

Item Value
RNA id XM_007228159.3
length 3089
RNA type mRNA
GC content 0.50
exon number 1
gene id fjx1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14008632 ~ 14011720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcggagcggagcttgGCTCAAAACTCAGTAGCCAACGGTcgcggagagaaagagagaggaggcgCGGTGTGTTCAGTACAGCGGAGAACAGCAGCGCGCTGCGAGCAGGGAGCTGAATTAGAAGCAGTGCAGTGGAAGAAGATAAAGACGGGTCTGCTTTGTTGTGTTTGGCGGTAGCGGcggaacacacacacttagaacAGAGACAGGAGAGGAGAAGTGAGGAGAGAAGTGTGTGACTCTCTTTATTATAAGTGTTCCAGTGGGGTTCCTGTGGGGCTGAGTCTCGCAGCCTCGTGGATGGAGAACACGTAGCTGAAGTCCggtgtgaagagtgtgtgcgGAGCGGATGGATATGAGGGCGGTTTCGGTGAACTCGCTGGCGCTGCTGCTCCTCTGCTCGCTCGCCTGCGTGCTGCACCTGTTTGGCGGCTTGGAGCGGCGCCTGGAGCGGCGGGAGCGGGAGCTCGGCCCGTCCTCCGCCAAAACTTTCCGAGCGCTGCTCGCCGTCCCGGCCGTCGCGCGGTCTAACAACCTCAGCGCGGGaattaccaccaccaccaccaccaatggGAGCACCAGCGTCCAGCGCGACCCCCTACCCCTGGAGGACGGCGTGTTCTGGAGCCGCAGCCTCGAGGCTCGCCTGCCCGCCGGCTTCAGCGAGGACCGCGCGCGGTTATGGAGCCAGCGCGCGCGCGCCCAGCGCGTGGTCTCCCTCGAGCCGGGTTGCGGCAGGACGTCCAACCAGCTGGCCACGTTCTCGGACGGGAGCAAAGCGTGCGTGCGCTACGGCATCAACGCGGAGCAGGTGCAGGGAGAGACTCTTGCTTATTACCTGGCGAAGCTGCTCGGCATCTCCAACGTGCCCCCGCTCGTGCTCGCGCAGCCCAGCAGCGCGGAGCAGCAGTGGGCGCACGTGAGGCAGCGCGTGGACGGCTTGCAGTGGTCCGGACGGGCCGTGGTGTCCATGACCGAGTGGATCGCCAACTTGAGCGGGGTGGTAACCCCCTCGCCCCTCCGGCCGGACAGCAGCGGCCTGCGCCCTACTATGGACCTGGGCAACCGGACAGAGGCGGAGCTGCTCGAGCTCGTGCAGTGGAGCGACCTGGTCGTGTTCGACTACCTGACTGCCAACTTTGACCGGCTGGTCAGCAACCTGTTTAGCCTGCAGTGGGACTCCCGAGTCATGGAGCGCAACACCAGCAACCTCCTCAAGACGCCCCAGGGCGTCCTGGTGTTCATAGACAACGAGGCAGGCCTGGTGCACGGCTACCGCGTGCTGGACATGTGGGAAAGGTACCACAGCTCCGTTTTGAGGTCTGTCTGCATCTTCAGGAGGAGGACGGCCCAGAGGGTCGCTGCACTGCACCGGTACCGCGATGCCCGGGCACGCCTCTTTGACCTGTACCGGGACAGCGAGCCGCTGGCAGCAGAGCAGGGCTTTTTGTCCGATGAACATGCCAGGATATTACAGGACCGGATAGACACAGTGTACAGGCACATACTGCACTGTAAAGGAAAGTACAGCcagctgtagttttttttttttttttttttttttacaataggtGCACACACTTTCCCAAAAATCTGAGAATGACGAGGACCACTGGTTGCGAAAGTAACTGATGCAAGCAAAACCTGTATTCTACTTTCTGTAACTTTTCAGCATCTGGCTGGACTATCTCCTGTGGGGACGAACCTTTAATGTGTTGAAGTGAATATTTGTTGAATTTTTAATGAGGAGAACAAtgttgtgtttagtttataagtCTTAAACTACAAAAGAAAGTTTAAACTAGAGGTGGATGATATGGATacaaatcatatattatatctCCATATTTAAAGAGTCTTTTCATCCAAGTTACTGCCATTAAATTACTGCCCAGTATTGagtacagtgatttttattttttgttaaacttTGCTCGACTCTATTCAATCAAACAGGACTAATAATGAACACACTTTGTGTTGGTGGACACAGTTGGTGCAGTTGGacggtgttttttaatcacccGTGAAATCAACTATTTGCTTAAAATGTTAACAATACAGTCATATATCcgcatatcgcccacctctagctTAAATCCACAGGAAAGACAAAGCACATTGCTTGTAATAGAACTAATCAGTTAGGCAATGCAATACAGGCCTATCTCCAGTCACACGTTGAACACAGACTTAACTGTTGTAGGTTGCTGCTTCCACCATTTTTTGGTGACGTTATtcttacattgttattttatttgatagATGCAGAGCTACATCCCAGTTAACAGGAATCTGATCACCAAGTGTTCTGTTAAGTGTTTTATTGGCGTATGCTTTGTTGTTAAAATACTTTGGAGAAGCTCTTGGTTGCTGTAGCGCTGCACTTGGTTTAGGATATATGACTGATTTACACTAGCTGCGTTCCAAAGCCTTGGCTGCAGTCAGGGTAGGGTAGGTAGGTTGTGAACACTGTTGATCACACATCTGGAACAGCTTAATGAGGTTTTGTGATAACGGCACCAGAACTGTTACATTTGTGATGCACAAATATGGGTGCTTTTTAATTTCTTCACAGGAATGaattatattacataattaattatatattataaaattctTATAACAAAGTTGTATGTGTGCACAAAATTGTGGATAATTAAGGGCAGGGAAGGATACATTAGTTGCATCCTTAAAATTCAGGGCTGTTTGGTAAGAGCCGCTCACTTTGGAACAGCCTTTTACAACATATCAGCCAAGAAATGCAGCCTCCCTTAGTTCTAGCCTAGGCTTTGGAAAACAGCTTTTGTTTCAAAAGTCAATGAAAATGGGCACCTTTTTTATTGTTCCTTCACAGCTTTACAATTCAAATAATAGCCTTAATGAAGTGATGGGATGTCCGTTGGTGTGAACAAGTATTGTGGGTTTTTGCTTTGTGAATTCTGGATATTctatttaactaatttaaaatcACAGTATGTGATAACATACATtccagttgtttttttattggtacaGAAAACCTGTGTCATTTTTACATGCCATTAAAACTAGTGGAACGGAAGCGTTTTCACTAAGCCGAACATGA

Function

GO: NA

KEGG:

id description
K16674 FJX1; four-jointed box protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99016 lncRNA upstream 1497 14006822 ~ 14007135 (+) True G73419
TU99014 lncRNA upstream 3408 14004653 ~ 14005224 (+) True G73417
TU99013 lncRNA upstream 5206 14003072 ~ 14003426 (+) True G73416
TU98991 lncRNA upstream 85336 13922601 ~ 13923296 (+) True G73404
TU98944 lncRNA upstream 177867 13828719 ~ 13830765 (+) True G73359
TU99020 lncRNA downstream 56863 14068583 ~ 14068794 (+) True G73422
TU99021 lncRNA downstream 58324 14070044 ~ 14070384 (+) True G73423
TU99012 lncRNA downstream 151107 14162827 ~ 14163220 (+) True G73415
TU99010 lncRNA downstream 151624 14163344 ~ 14164340 (+) True G73414
TU99043 lncRNA downstream 153074 14164794 ~ 14165656 (+) True G73443
XM_022671916.1 mRNA upstream 180210 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 243582 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 331556 13669622 ~ 13677076 (+) True ehf
XM_007228150.3 mRNA upstream 331791 13662809 ~ 13676841 (+) False ehf
XM_022672163.1 mRNA upstream 331791 13669622 ~ 13676841 (+) False ehf
XM_022672166.1 mRNA downstream 66292 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 226319 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 535077 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 544300 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 544300 14556020 ~ 14562537 (+) False LOC103025904
XR_002650241.1 other upstream 1110701 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1405208 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3926492 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4859213 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7123091 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 637109 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 879814 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2274956 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4443131 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5071096 19082816 ~ 19085556 (+) True G74832

Expression Profile