RNA id: XM_007228164.3


Basic Information

Item Value
RNA id XM_007228164.3
length 967
RNA type mRNA
GC content 0.41
exon number 7
gene id cib1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14550872 ~ 14554955 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCGTTTCTATAGAAACTAGCACGTCGAGCAGGAAGAGGAAGTGTAGGTCGTGTTTGAGAAGTTTTTTTAGTCCAAAACACAAAGTAAGTTCAGTAATCGATACTTATCGATTAGCTGACCGCCAGCACGGACACTACCCGACAAACAACACCATGGGTACAGCAGCCAGTAAATTACCGAAAGATCTGTTGTCCGAGTATCAGGAGCTCACGTTTCTCACGAAGCAAGAAATTCTCCTGGCACATAAGAGATTCACTGAACTCCTGGATCGAGGAGACAGACAGCAGGCTTTCAACTCTCGTGTACCCATGACTAAAGTTCTTACTTTACCTGAGCTCAAGTCCAATCCCTTCCGAAAAAGGATCTGCAATGTTTTCTCAACGTCTGATGTAAAGGATGGGAGCTTATCCTTTGAAGACTTCTTGGATCTCCTAAGTGCCTTCAGCGATTCAGCAACGCTTGAAATCAAATCTCACTATGCGTTTAGAATCTTTGACTTCGATGATGATGGCACCCTTGATTCTGGAGATCTTGAGAAATTGGTGAACTGCCTGACTGGAGAGACAGAGGACACACGACTCACTTCTGAGGAAATGAAGCAACTTATAAACAATATTCTTGAGGAGTCAGACATCGACAAAGATGGAACAGTAAACCTTTCTGAGTTTCAGCACGTCATTTCCAGATCTCCTGACTTTGTCAGTTCATTCAAGATTGTGCTGTGAAGCGTCAGAAgcactgaaaacattttgtggtCCGATGCATTCACGACAGGACAACAGTACTTTCCTCTTTTCTTAACAGTCCTAATGTAGGTGTTAATTGACATATACTCTTATCAGTATTTCTATGCTTTTCTAATTTATAAAGAAATCTGTACATATTTTCTGCACAACCTTTCTTTACTCTAAACCTGTatttttggagatattttatatttaataaacgcATGTTGTTTCCCTACA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17259 CIB1; calcium and integrin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99124 lncRNA downstream 82731 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 273766 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 478834 14070499 ~ 14072038 (-) True G73434
TU99030 lncRNA downstream 512504 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 543723 14006752 ~ 14007149 (-) True G73429
TU99167 lncRNA upstream 42996 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 43499 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 120926 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 154106 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 190215 14745170 ~ 14748658 (-) True G73617
XM_007228165.2 mRNA downstream 5336 14542196 ~ 14545536 (-) True LOC103025073
XM_022672168.1 mRNA downstream 90484 14390685 ~ 14460388 (-) True LOC103024229
XM_022672165.1 mRNA downstream 586846 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA downstream 586846 13920173 ~ 13964026 (-) True pamr1
XM_007228154.3 mRNA downstream 667307 13861550 ~ 13883565 (-) False slc1a2
XM_022672170.1 mRNA upstream 11955 14566910 ~ 14574221 (-) True LOC103040849
XM_007228304.2 mRNA upstream 19840 14574795 ~ 14578518 (-) True LOC103041151
XM_007228175.2 mRNA upstream 59436 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA upstream 59436 14614391 ~ 14619171 (-) True LOC103028140
XM_007228172.3 mRNA upstream 85046 14640001 ~ 14649251 (-) True gpr22
TU99163 other downstream 5434 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 1929516 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1985906 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1985998 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1986074 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1206809 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3322071 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3427792 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4384219 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4515983 19070938 ~ 19072888 (-) True G74838

Expression Profile