RNA id: XM_007228168.3


Basic Information

Item Value
RNA id XM_007228168.3
length 2268
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103025904
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14556020 ~ 14562537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAGTCTGTGCTGCGGGGCGGCCCTGCTGCTGGTGGATCATGGCGGATGAGGAGTTGACAGAGAAGGGAACTCCGAAAGTGGAGATTCTTCAGAACGGAGATGCGCACAAGTTAAAGGAGGAGGGGGAGCAGGTGGAGGAGGCTTctaagaagaagaggaaaaagaagaagaagagtaaaGCGGCGGCTGAAGTGAACAATGATGCTGAAGAAGCAGCTGACATCAATAAGGTGACGAAACAGTTGGAGCAGCAGGCCTTGGATGACCAAGAAAAGGAAGATGACGGCGAGGATGATGGAGAGGAAGGAGATTCAGctggaaagaagaagaaaaagaagaagaaaaagaaaggatCCAAGGGACAGACAGATCCTCCATCTATTCCTATATGTGAGCTTTATCCAAGTGGAGTTTTCACCAAGGGACAAGAATGTGAATATCCAACTGTGCAAGACGGCCGTAGTGCTACATGGAGAACAAGCATTGAGGAGAGGAGGGTGTTGGACAAGGCCAATGAGGAAATGTGGAATGACTTCAGGCAGGCAGCAGAAGCTCACCGGCAAGTCAGGAAGTACGTCATGAGCTGGATTAAACCAGGCATGACTATGATTGAGATTTGTGAGAAACTGGAGGACTGCTCTAGAAAACTAATCAAAGAGAATCGTCTAAATGCTGGTCTTGCTTTTCCTACTGGTTGTTCCCTCAACCACTGTGCTGCACACTACACCCCCAACGCTGGGGATCCCACGGTGCTCCAGTATGATGATGTCTGCAAGATTGACTTCGGCACGCACATTAATGGAAGAATCATTGACTGTGCCTTTACTGTCACCTTCAACCCAAAGTATGATAAACTGCTAGAAGCTGTTAAAGATGCTACAAATACTGGAATTAAGTGTGCAGGAATAGATGTCCGTTTGTGTGATATTGGGGAATCCATTCAGGAAGTCATGGAGTCTTACGAGGTTGAGCTAGATGGCAAAACGTATCAAGTGAAGCCAATCCGGAATCTCAATGGCCACTCTATTGGACAGTACAGAATACATGCTGGCAAGACTGTCCCCATTGTTAAGGGTGGTGAGGCAACCAGAATGGAGgaggGAGAGGTGTATGCCATCGAGACCTTTGGAAGCACCGGAAAAGGCATGGTGCATGATGACATGGAGTGCTCACATTACATGAAAAACTTTGAAGTCGGACATGTGCCAATCAGACTCCCAAGGGCCAAGCACCTCCTGAATGTTGTTAATGAGAATTTCGGCACATTGGCATTTTGCCGCCGCTGGCTAGACCGTCTGGGTGAAACAAAGTACCTGATGGCACTAAAGAACCTGTGCGACCTGGGCATCATTGACCCCTACCCGCCTCTGTGTGACACCAAAGGCTGCTACACTGCTCAATTTGAGCACACCATCCTACTGAGGCCAACCTGCAAGGAGGTGGTCAGCCGTGGCGATGATTATTAGAGCTTATGCTCACCAATTTCTCAAAATTACGGACGCACTTGTGTGTTGAGTTGGGTGGGAGGTAAATGCTTGGCTAGCCTGTGCCTGTCACGTTGACATTTATGGTATTTCTGGAGGATTTGGGGCTGTGAGACTAAGAGGTTTGTCTGTTGGCATTCTGTATGCTTTTGGAGGTTCAGGACAGAGAGTTTTGATCTCCTCACCCTCCAAATTAGCAAGCgttaaattttgaaaaattggtGGACGTTTCTTAATGTAAGCGCACCATGTTAGCCCAGGGAGGTCTAATGTTGAGCTGTATTACACCACCATGCAAAAAAGTATTTAGAGGGGTGACGAGAAGGTAATGTTCACTGATTCTCTATTTTTCCTTTCCTTCATATTGGGAACAGCTTTGTTCCTCTGCAGCTTTCAGTTTTAGTcttatttgattaaattttgGATGCATTGATAGGATGGTGCAGAAattggattttttaaaattccTGTTCACAGGAATAAGCCAGTATAACAGTGTAGATACATCTTAAACATGCAGCTGTGCTTTGTTGCCTTTACGGAAAAAGTAATAATGCTTTCGTCACTTGGACAACATCTGGCGATGACTCATAATAATCTTGCATGTTTGGGCTGAGCTGTGTTTTGAGCTGAATTCAGTCACTTCTCTGGATAAAGCACaatgtagtgttttattttgaattacaAATAAACTTTGTAAGAAATGATTACTTTCAACAGTTTAGTTGAACTTGTCTTATCTCTCAGCATTGGAAACAAgctataataaaatgtgaaatttaa

Function

GO:

id name namespace
GO:0070084 protein initiator methionine removal biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005737 cytoplasm cellular_component
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99136 lncRNA upstream 10507 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 231397 14323965 ~ 14324623 (+) True G73468
TU99066 lncRNA upstream 286296 14266776 ~ 14269724 (+) False G73464
TU99154 lncRNA downstream 51881 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 75410 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 83906 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 113336 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 281908 14844445 ~ 14844664 (+) True G73598
XM_022672169.1 mRNA upstream 5100 14546797 ~ 14550920 (+) True rccd1
XM_022672167.1 mRNA upstream 166699 14238039 ~ 14389321 (+) True ldlrad3
XM_022672166.1 mRNA upstream 394721 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 544300 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 727598 13794413 ~ 13828422 (+) True cd44
XM_007228169.3 mRNA downstream 28066 14590603 ~ 14595936 (+) True LOC103026417
XM_007228171.3 mRNA downstream 35428 14597965 ~ 14605957 (+) False slc25a3
XM_007228170.3 mRNA downstream 35428 14597965 ~ 14605957 (+) True slc25a3
XM_007228177.3 mRNA downstream 45052 14607589 ~ 14614390 (+) True LOC103028647
XM_007228178.3 mRNA downstream 45561 14608098 ~ 14614390 (+) False LOC103028647
XR_002650241.1 other upstream 1658089 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1952596 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4473880 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5406601 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7670479 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 86292 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 328997 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1724139 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3892314 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4520279 19082816 ~ 19085556 (+) True G74832

Expression Profile