RNA id: XM_007228169.3


Basic Information

Item Value
RNA id XM_007228169.3
length 3195
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103026417
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14590603 ~ 14595936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACTAGCATATGATATTTAACAGGGGATGGGATATTATCTTTTCTCATGTGGGAGAGGCTACACTTTAGGATTTAGGATTAGTGTATGTGTATAAACTGAGAACCTAGCGTTAGTTAGCTATCTATCTTTGCTCAGGAACCCTCCGCTCTCCTtcgcttcttcttcttcctctcggCGCCTCCATCGCGCTCTTTGTTGTGGCAGACGGCTGACATTTGTCCTCCACCAATAGGAGAGCGCCTTATTGAGCGGAGGCTGCCAATAACGTGCGACCTCATTGGGAGGGGGCGGCTGTGGCGAGAGGCGCGCAGGCGATCGGGATACGGTAAAGCAGCGAGCGGGGCATTTGTTCTCGATTCCGGTTGGAAAAGTGAAGCAAACTCCGCGCCTTAGCTGCAGTATTTGGCGAGGCGTCGGTGCGGGGAGTCGGTGTGAGGCGGTATCCGGGAGTAATCGGTAGCTGAGGTCGTCGTGTGAAGCGCGGGAACACATTCAAACCCGCCCGCCGATCTGACGTGTGTCCGCGGAGCCGCGCTGCGGGACTCGGACCCACACCGGAGAACtagcttagcgcggttagcactgttagctgaCCCCGCTAGCTTTAGATAACAGCCGGGGGAGAACTCATATTTACACAGTTCTGCCTTCAGTTCAGGGCTCTCTCCTGCCCGCCCTGGCCCGGTCCtgagctaaagctaagctaacttggctaactaactagctaacaaacaaacaaagcatgGCGGAATTCTTGGAAGACCCGTCGGTCCTCACGAAGGAGAAGCTGAAGAGTGAGCTGCTCGCCAACGATGTTCCTCTGCCCAGCGGAGAGCACAAGAAAGAGGTGTATATCCAGCTGTACCTGAAGAACCTCACCGCTCAGAACAAGAGGAAAGCTCCCCCAGCGGACACCTTCTCCAGCGACGAGGAGATCACACCAGTGCTCTCCAACAGGAGCCGCTCTGGAAAGAAAGCGACAAAAAAGACGGATAAAGCTCGAAAAGAGGAGGTGGATGTTTTCAGTCTTACTGATGAAGACCTAAAGGTTCAGCTGTTAAAGTATGGAATCAATCCAGGTCCCATTGTTGCTTCAACTCGTAAACTGTATGAGAAGAGACTTCAAAAGCTGTTGGATCAGCCGCCATCGGAGACCACACCACCTGAACCAGAGACTGCAGTTCCAGAGACGGTCACTCTGAAGGCTGATGGAAATCAGAACGGCAACACAAACTCTGTGGAGGATCAGTACAGTGACAAGGATGAAGcTGCAGATCCAGAACCAGAGCCAGTTCCCGTAGCCAGCAAACCAGTGAGAAGCAGAGGAAAGACACCAGTCACCACTAGGACAAGCAGCAGACAACGCAGCAAGcTGGTGGAGGAGACACAGCAGGCAGATTCTGTGGATGGACGTGATCTTTTAAAAGATTTGTTCCCTAATGAGCCTGCTACACCAACAGGCATTACTGCAACTTGCCGAAGGCCAATCCATGGAGCAGCTGGACGCCCAGTGAGGCCAATGGACCTTTGGCCGGAGGAGTCCCTCCTACAGAAAAGTGtgtacaccaccaccactaccaccaccaaaTCATCCCTCATGGACAGTCGTAGTGCTCCATCTTCTGTCACTCCTCCTGCTCGTCGCTCCTTCTCCATCTGGCTGAAACTTCTGGTGTTTCTCACATTAGTGGGCACTCTTTTCTACATCTTCCAGAATGTGACCCCTGAGCAGATTAACACCTGCAAGCTCTTTATACAGGACAGTGTGGTCAATCCACTACTCAGTGCTATTGGCGTCGTTGATCAGGAAGAGAGTGGTGGTGGCAAATAAGCACTGCCAGTGTGTCTCCAGAACGTGTGCATGAGCTGTCTTTACCCTCAGACTTTAGTTTCAACCCCATACCTGGTTGGTTGAAAAGTCAACATTTTTGCAGGGTTTTTGGTTATCGCAGTACAACTTCGCAGTCGTGTCtgaaaatacttgtttttaagtAGTCTTTAAATTTTGTGTGAATTGTGTTTTCatcatgctttttttgtttttgctgttttgtagCAGGTAATATGAGAGAGGAAGGAATAGTATTTGTCTAGCCTTGTATCATGGTGAACAGTTGCCAGTATGTCAGTAGCACTTCAAGGACTTCCACCCCCTATGAAGACACATGTTTTGAAAATCAACAAACCTAAAATGGTTCAGTGTGTGTTGAACACGGGTTGTATGAGCCAAATGTGAATTTAACATACCATACCTGTTAAAAGGCAGAACTTGTGTGCATTGGACTTGAGTTACAATTACTGTATGTACATAAAATTTGAGGTTTTAGGTTATTTTACTCTGACAGGTTCAGGACAGCAAAATGTCTTGTTTGGAAATAGTATCTTTTACTAAGCAGTTAGCTTCCATCTAAGTGTATTGTAGCATTGAATTGTGCTCAAACTAATAGACTACCAGGTCAGTTATGCAGTTTGCTTTTAGTGCCACATGAAGTTCTGGTCTTCACCAGAGTCTGGCCCACAGCTCTGCTCTCTCAGGCAATAGATGGCGTTTCAGTGCCGTTAACTGGTTCATTTTGTGATAGATGACGGCTCATTTAGTGTGTCATAATATAGTCGTCATGTGATGTGAGTATATAGCTTTGGAAATGCTTAAATCTGTCATGACACTTTCCATTGTCAAAAaacactttgttttttgttattcctCTTCTATTTTGCCCCTGGTCAAACACTGGTTATCTGGCCAAAATATGAATTGATTTATTTGCTCTAATTTAAAAGTTGGCATTAAGATACATTTGCCAAGCATGAAATTCCTTTTACCTTTTCAATCAGATGAATACATTTGTGGTGACCTTTTGTTCTGaagttttcttttatattttactacttggaattaaagtgcttttgcttttttaactGCAATATTTTTCTAATATCTCTTCTTAAACAAGTAAACTGAGGGGAATGAGATGTGTACATCTCAACAAATGCTGTCAGCATTTGTTTCTACCTGCTTTCCAAAGGCAGAAATGGTTTTTAAAAATGGTGAAATTTGCACTTTGTCACAGGGCAGCTAACAGGTAAAAAGGTAAATATGAAATTTGGACGTTTTCCTTCTGATTAAATTGATTGTTTTATCATTTGGTTGAATACAGTAATGGtgtgaaataaaacatgaaagacAGCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99136 lncRNA upstream 45090 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 265980 14323965 ~ 14324623 (+) True G73468
TU99066 lncRNA upstream 320879 14266776 ~ 14269724 (+) False G73464
TU99154 lncRNA downstream 18482 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 42011 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 50507 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 79937 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 248509 14844445 ~ 14844664 (+) True G73598
XM_007228167.3 mRNA upstream 28066 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA upstream 28066 14556020 ~ 14562537 (+) False LOC103025904
XM_022672169.1 mRNA upstream 39683 14546797 ~ 14550920 (+) True rccd1
XM_022672167.1 mRNA upstream 201282 14238039 ~ 14389321 (+) True ldlrad3
XM_022672166.1 mRNA upstream 429304 14078012 ~ 14161299 (+) True trim44
XM_007228171.3 mRNA downstream 2029 14597965 ~ 14605957 (+) False slc25a3
XM_007228170.3 mRNA downstream 2029 14597965 ~ 14605957 (+) True slc25a3
XM_007228177.3 mRNA downstream 11653 14607589 ~ 14614390 (+) True LOC103028647
XM_007228178.3 mRNA downstream 12162 14608098 ~ 14614390 (+) False LOC103028647
XM_007228174.3 mRNA downstream 24535 14620471 ~ 14626071 (+) True slc35b4
XR_002650241.1 other upstream 1692672 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1987179 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4508463 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5441184 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7705062 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 52893 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 295598 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1690740 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3858915 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4486880 19082816 ~ 19085556 (+) True G74832

Expression Profile