RNA id: XM_007228172.3


Basic Information

Item Value
RNA id XM_007228172.3
length 5443
RNA type mRNA
GC content 0.44
exon number 3
gene id gpr22
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14640001 ~ 14649251 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgtgtgagtgtgtgtatgtttgattatgtgtgtgtatacgccTGTGTGAGcgagagggagatagagatagaaagcAGAATAAGAAGGACAGTGAATGAAAGTGGAAGGACTGCCTGAATTTGCCTGcatattctcattttttccagctGCTCTTCTTGACACTCTCTTCACGGGGATGAGGAAAAGACTCTGACTGTTTACACCTCCTCTCTTCAATGCTCCCCTCCAAGGGGCAACTCTTGGAACCTCAGGGAATTCTGGGAATTACCTTGCCGGACCCTCAAGCAGTATATCAGCATGTAGTCTCGGGCACAATTACCCCTAGATAGGATCAGCGGTTGGAAAATTGTGGAAACAGCTTTGAAGTAATTTGGGGGTACCTGCTGCTGGAACTACTGGAGGTCAACATTTATACAGAGGGTGCTGGAGGAATGGATCTGAAGGAGACTGGGCTTTTGAGGCACGGTACTGTTCATGCAAGCTCTGGTCCAATCCCTCATTGGACACTTGCCAAACCAGGACCAGCAACTAAAGAACTTCTCGATTACCTTTTACCTGAATAGGTCAAGTACCTAAAGCTACAGAATCAACAACCCGTTACACTGGAACATGTGAACTGTTTTCACGCACAAGAAGAATGGATTCACAAATGACTACAACAACCTCATTTTTAATCCAGTAGAGTGCCACGGATTACACTTCACACTTCACCAGCAGTGATGCTAAAACCAGGCTCGAATGGACACTGTTAACAAGGGCTCTTGGAAGTGACCTCTGCACACTCTCACGACTGCTGACCTCTCCAGATCTGCGACCTTGCTTCGCTGCTGGTGTGGTGGAGGCTTATGTAAATCAACATCAGCAAATCAATAAGTATTTATCGCTGAGGTTGCTCCATAAAATCTTAATTATGGGAATACAATGCAGCCCACAGAAAAAGGCACCTTGAGATGGAGCAGACCTGTTTAAATACCTACTGTGTTGTGAGTTGCATCTGAGGCTTTCTTTAATGGTGGGTAGAAGTTTTGTTAATTTTGCTAAattgtaaaaagtaatttactCTGAATTGCACAAATTTCCTCAGCaaattttttggtaaaattatcTGATttcatcagattttttttcctggttTAATTCTCTGACTCAACAACTTTTATTGAAGTGGCACAAAAGTAGGTTTAGATGGACAAGCGGACAGTTCTAGCAGTACAAGCAGTCCATCTGCCCATCTTCCCTCCAGTCTACAGCAAGCTAAActaacacagagagacagagatgggTAAGTGGAATCTGGCTGACCTTAAGTTTGTGAAATTAATAGAGGACTGCTTCTGAAGCTCCAGGCTTGGTGGATTATAAGGATTACAGGGTGCGAAACACTTCCTTGAAAAGCCATGCTTGGGTTTGATGGTCGACTTGGACTCCACCCAGAGTCTTCTGGGCCAACCACAGACgacggagactgaggaaagacAGAGCTCTGGAGAGGGGATAATGCACAAGCCTATTCCTTCGGCACAGGAGGAAGGCACCATGAGCAACGTCACAGTCTTGGACATCACCGAGTCTGCAAGCCCAGGCATGGCGTCGGACGAGCCGCACCCGTATCCCCTCAGCTTCCAGGTGTCGCTCACCGGCTTTCTCATGCTGGAGATTGTGCTGGGCCTGAGCAGCAACCTGACAGTGCTGGCCCTCTACTGCACCAAGTCTAACCTGGTCAGCTCAGTCAGCAACCTGGTCACCATGAACCTGCACGTGCTTGACGTGCTGGTTTGCGTGTGCTGCATCCCACTGACGAtcgtggtgctgctgctttcgcTACAGGGTGACACTGTGCTCGTCTGCTGCTTCCACGAGGCCTGTGTGTCCTTCGCCAGTGTGGCCACAGCCGCCAACGTGCTGGCCATCACGCTAGACCGCTATGACATCTCTGTCAAGCCAGCCAACCGCGTGCTGACCATGGGCCGTGCCGCTGCATTGCTGGGGGCTATCTGGGTCCTCTCCTTTCTCAGCTTCCTGGTTCCATTTGTGGAGGTGGGCTTCCTGGGACCAGAGCCCACCATGGCCAACCAGACGGCCGTGGCACACGTCAATGAGTACTACACTGAGCTGGGTCTCTATTACCACCTAGTGGCCCAAATACCTATTTTCTGCTTCACGGttgtggtcatgctggtcaccTATTCCAAGATTCTCCAGGCGCTCAATATCCGCATTGGCACACGCTTCCACCATGGCtcgcagaagaagaagaggaagaaaaagaagacgAATGGATCCACACGGTGGAAAAAGGACATGTCGCTCATGGCCGCTTCGCCTCAGCAGCAGCCTGAGGCAGCAGACGGCTCACAGAGCAGTGGCACAACCCGGGGCACAGCACCACTGGGCATGCGCACTTCAGTGTCTGTAATCATCGCCCTGAGGCGTGCGGTCAAACGGCACCGGGAGCGGCGCGAGCGGCAGAAACGCGTCTTCCGCATGTCCTTGCTCATCATCTCCACCTTCCTGCTGTGCTGGACACCTATCACCGTGCTGAATAGCATTATCCTTAGTGCAGGGCCCAGCGACCTCACCGTCAAGCTGCGCCTGGGCCTCCTGGTCATGGCCTACGGCACAACAGTATTTCACCCGCTGCTCTACGCCTTCACGCGCCAAAAGTTCCAGAAGGTCCTCAAGAGCAAGATGAAGAAGCGGGTGGTGTCCATCATTGAGGCAGAGCCACTACCCACCAATTCAGTCATAAAGAATTCCTGGATTGACCCCAAGAGGAATAAAAAAGTGACATTCGAGGATCAGGAAGCCAGGCAGAAGTGTCTGTCCTCAGAAGATGTTGACTAGGAACTTATAACTTGTAGACATTGAAATATACAGTCTTATGCAAATGTTCAGGCACCGTTGGCCACATTTTGTTGTTGAGAAGTAGAAAACACATCTGCACTGTTAGAAATAGGGACTGTGAAGGAACATTTTGCTCACCAAAGTACAAACAGTGCAAATATATCCTCCTCACTAGAACAGCGTGATCCTTCAGGTACAGCAGTGTCCCTTAAACACAGGGGAAGATTACTGCCAAGGAAGTACAAATATGTACCTTAAATAAAGGTACCTTTAATAAAAGTATCGTTCATGGTAACACCCTACCGGACAGTTTTGTACAATTCCTGTGTACAAATCAAACATACATAGATGAACACAATATTTTTAGCAATTCCTAATGCATAGTTACATCATTTTCATGTCAttgaaaaagaataaataataatgataaaagtgTGGACACCTTACAGTGTCAGTATTTAACAGTATCACCCCCTTTAGCAGAAATTAAAGCTTGTAAATGCTTATTGTACCCAGTTTATAGTTAGGTCAGTTCTTCTAGTTGGAATTAATTCCCACTTTTCTCTACAGAAGGACTAAGATTTTGTGGCTTACTTGTGTTGTTTTGCTTGCACGGCTTGTTAAAGCTCAATCAACAAATATGCTATGGTTATGAGGTCAGGAGACTGTGAGTTACATTCCAAAAGCTTCCGTTTGTGTCTCTTCAGGCAGTCCATGATGGATTTTGAGGTATATTTTGATTCATTGTCCTGTTACAGAAGTCTTTTTCTAGCTTTAGTGTTTTAACAGATGGTTTGATGTTTTTATGCAGGACTTGCTGCTATTTTGTTGACTTCAGTTTTCTCTACACCTGTATAATATTGCCAGTGCCACTGGTTGCAAAACAACCGCAAATCATGGTAGATACATCCCCCTGCTTCACAGTTGGCAAggtgttctttttaagaaatgcagtttcttttttctccaaatatatataattttgtttacTGTGCAGAACCTTCTCGATTCAACTTGGCTACACTTTTCTGCAGGCTCttgtgtgttttgatttatcTGTATTACCAGCCTGAGACCTTTTTTTCACATCTTTAGACAGTGGTTAGAAGAGCATGTGTTTGATGCCTGTTACTACAAGGGTAAGACTGTATTGGAAATTGAATTTAGCTGACAGTTTCTAATTATCATTGGTGATATGCCTCAGGCCTGATTTGCTAATCAAGGTCAAAAACCTTGTAATGTGTAGTGtcaaaacattttcacacaccACACTGACAATGTGCATTTTACTGCTGTAAGACAACGTATCAGTGCGTTAGGATTTTTCCCACAAACTAAAGGCTGTGCTTATTATTTctcaacaataacaaaaaatccAAGGGTGCCCAAACATTTGCATGAGACTGTACTTGTTGCCTCAAAACGTTCAGAAGTCTTCAGTCTGTCAAAGTAGGAAGAGACTGATACAAGGTCTTGATGTAGACAGAAGTGTATTAGATGTGCATATAGAATACAGTGTCagtttattactatttatatgAACTTCAGATTTAGTATGACAGGATGACATTCActgtgctgaaaaaaaagaaacactgcatgCTTTTGTAACACTGTATATAAGTCAATATTGGAGATGTATAGTATACTCTATATGAAATACTCTATGTACCATTATTAGGATTCATAGGCAGAATATATCTAtgtatttgtaataaattaGGCCAAAAGAGACGACTGGAGTTCAACACGGATACATTTGCTTCTCTGTCCACAAGGAAGCGGCCCACCTTTGACCCTAGCTgatgttttatttcacattcTGGCTCTGCTCCTGTAGAGCTATTATACAGCAGCTCAAGCCAAGAGGTCAGCCTGAAATGGGACTGCAAAATTCATAAGAGACCAGAGCTACAAGCAGTTACAAACTTACAACTCAGGCCACTTAAACATAGACATAGTTTCCACTGGGGGAGGGAAAGAATATCAACCCATCCCCCAAAATGTAGTAAGCTCTTTAGCCAACCAGCTAAAGCTCAATTGTAATCTGGATGAAATACAATCGTAACAGGGGTTGACTGACAAAAATCAGTCAGAAAATATTACCATCACCCCATCTGAAAATATGCACTTTGTTGTTTGAGGACATGTAAAACATATTCAAATTCCTTGAATGTATACAAGGGAAATATCTGGCCCACTTCAACACTGTAGGACCTCAAGGCTACTCTTTGTGAGTGTTTTTACACCCATAGTTTGTTCGCTTTCATCCATGAGTCTTTAAACATGGAGCATTCCCctcttggtttggtttattttcacacagggaAAAACCATGTGAGAATGTTCTCTTtgcttattggtcagacctgTTTGGGgcggagcaagaaagtaaatacaggaagaaggcgCTGTGTTATAGATGAATGCATATTTCTGTAACATTTACCATAGAGCAACAAAAGAGATGGAATTTGTTTAAAGCTGCAGCTGCAAGTTCACACCACAAATGAAACACACCAAAAACTCCTCTAATGGGTCTTGTTGTGGTTATTTTGGTTCACATCGGAGTGTAAATACTGTTTTAACACctgccc

Function

GO: NA

KEGG:

id description
K04319 GPR22; G protein-coupled receptor 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99167 lncRNA downstream 34041 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA downstream 34041 14598454 ~ 14605960 (-) True G73540
TU99124 lncRNA downstream 171860 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 362895 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 567963 14070499 ~ 14072038 (-) True G73434
TU99251 lncRNA upstream 26630 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 59810 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 95919 14745170 ~ 14748658 (-) True G73617
TU99272 lncRNA upstream 107648 14756899 ~ 14757248 (-) True G73622
TU99250 lncRNA upstream 148104 14797355 ~ 14800633 (-) True G73605
XM_007228175.2 mRNA downstream 20613 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA downstream 20830 14614391 ~ 14619171 (-) True LOC103028140
XM_007228304.2 mRNA downstream 61483 14574795 ~ 14578518 (-) True LOC103041151
XM_022672170.1 mRNA downstream 65780 14566910 ~ 14574221 (-) True LOC103040849
XM_007228164.3 mRNA downstream 85046 14550872 ~ 14554955 (-) True cib1
XM_022671917.1 mRNA upstream 38438 14687689 ~ 14690107 (-) True LOC111193055
XM_007228180.3 mRNA upstream 59807 14709058 ~ 14717691 (-) False hbp1
XM_007228179.3 mRNA upstream 59807 14709058 ~ 14715560 (-) True hbp1
XM_007228182.3 mRNA upstream 69303 14718554 ~ 14733253 (-) True prkar2b
XM_007228192.3 mRNA upstream 173967 14823218 ~ 14826889 (-) True mphosph6
TU99163 other downstream 94563 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2018645 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2075035 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2075127 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2075203 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1112513 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3227775 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3333496 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4289923 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4421687 19070938 ~ 19072888 (-) True G74838

Expression Profile