RNA id: XM_007228173.3


Basic Information

Item Value
RNA id XM_007228173.3
length 2353
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC103027493
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14627212 ~ 14637073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATGTGTTGTTATATAGTGTTTGTAAGCTGTAGACACAGAAGGCACGTTGGGATATTGGGATATTGACCCCAGTGTGTTGACATTAGATTTGACCCCATAATTCCATGGGGGGACATGTTACCCTACACCACTACTAGCAGGGTCCTCCTCAGTGAGGAACATGCAGTAGctatgtatagtgtgttgttTTTTGGACTGAGAAAGACTCGCTCCAGTGAGTGTGAAAGATCTGCTGCCCTCAGGCCCATTCCTGCTGGAGACCAATACACACAGTTATTACAGGCGCTCAGCTCACTCACCCAATGGGGAAAGCTTTTATAGAGAGGGGGGGCAGGGCAGGGTCTGGGGCTCCACTCTGGGTGCAGGACCTGAATGTGTGCAGTGTCAAAATCTCAACACTTTTAATCTTATGTTGAGGTACAGAGGGACCTGCTGACCGCCGCTTCACACATAACATGGGGGGAAACAGCAGCTCGAGACTCGAGGATGAAGAGGTTATTACAGTGGTGAAGGGCATCCGGCTAACAGATCGTGTGATTGATCGTATGAAGGAATCTCCTAAAGCAGCAAAACAACGCCCTCAATCAAATAAACAAGCACATCCACCTCTGAATCTTGGCGTGCCTTGGTCCCCTACTGAGCCACTGGGACACATATTGCCTCATCATCCTTCTTATGCCAGTTCTCTGGTGACACCACCTCTCCAAGTGCCTGTACCGTTTGCTTCTGTGAGTCAGGAGACTCCTGCACCACCTCCGCCTGCAGCTCCATCTACAGTACCTACTGTAGAAGCAGTTTTGTCTTCTCCTTCATCtcaggaaagtgcagcaacttcTCAGCATACAGACTCCTTAAGAGGAACTACAGCTGTCCCTGCTGGTACTGGAGTCACACCTCCTTCATCACATGATGAATCCATAGTCCCACCTGCAACTACTGAGTCCACAGCTGTACCTGTTGAGCCTTTCCCTACAAACACACTTGCTGAAGAAATTGCTGCATCTAAAACTCCATCTCCTGATGCACCATTCACTGCACCAGCACCAGTGCCTCCTCCTCCTGTTACAGCTGAATCTGTGGAGGAGCTAGCACCCCCTCAGTCCTCTTCTACACTGGTCCTACCTTCTGAACTACCCTTTATGGGGCAGAGGGGACCAACTCCCACTGAAGAGACTTCAGCTCCACAAGCTTCTGCTCCTACTGCAGAGCCTGATGTTCTCTCTATGCTGACTCCTCTTACTGATACGCTAACTCCACTAGCCTCTCCATCATCACCCCAGGCTGTAGTAAATGAGGAGGAACTGAGGAAGCAGATCAGGGATGAACTGCAGAAACAGCTGGAAGAAGAGATGAAGACAGCCAAGCTGAAGATTCAGCAGCAATTGGAGGAGGAGAAAGCTAAGGCGGAGGCAGAGGCCGGGGCCAAAGCTCAGCTGCAGATCCAGGCAGAGGTTCAGAAGGTTCTGGAAGGAGAGCAACAAGCCCTTCAGCAGTCTCTAAAAGATGCTATTATGCAGGAGCGCATGAATACTGAGGATGAGCGTCTTGTAGCTCAGTATTATTGGATGGAGAGAAAGATTCAGAAGGTggaggaaagagaaaaacaactGGAAAAGCAGGATATACTGTACAGAAATCAGATTACCAAACTGGAGGAGAAAACTGCACAGTTCACCAGAGTTACAGCAGAAAGCTTCAGAAAGGGTTTGGAGGACACTCACAATCGCTTCAAGAGGTCCCAGATAAAGCCAGTTTGCTCAGAGCTGCAGAGTGAGATTTTGAAATGCTACATGATGAATACAGGCAAGACTCTGACTTGCTCCAACATTGCTTCGCTCTATATCCAGTGTGTGGACAACGCTAAACAGaacaaAAAGGTGAGCACAGGTGGTTAATAACTGATTCCCAAGATCAACAGAAATATTATCATGAAATGAGAGCACACACCACCTGAACAAGAAGAGCCTTACTACCAGCTAGACCTTATCTTCAATCTGTGAGTGAGAGTGTTCCTCTCTCTACTGCAAGAATGTGAAGAAACTGGCCAAGGAACAACACTACAGATATTTTCATACGGATTATCTGCATGACAATGCAATGCAAACAAGGCTTATTCTTTACTTTCCACCCACCAGTCTGAGGAAATATTTTGACACTGAAACTACACTTCCAGTCAGCAGGAAGAATAAAGAACcgtgcctttttttcttttactttcatCACGGCTGAAAGAGCTGAGCCGAAAgcctattttttaaattcaagaGATGTGAGAGATATTGCGTGCCAAGGAAGGAAATGAAATACCTTCATTAAGGAGAGTAAAAATCCTGTCATTTTTCTCTGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99154 lncRNA upstream 7890 14614418 ~ 14619324 (+) True G73529
TU99136 lncRNA upstream 81701 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 302591 14323965 ~ 14324623 (+) True G73468
TU99067 lncRNA upstream 358299 14266776 ~ 14268915 (+) True G73464
TU99150 lncRNA downstream 874 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 9370 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 38800 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 207372 14844445 ~ 14844664 (+) True G73598
TU99411 lncRNA downstream 486799 15123872 ~ 15126987 (+) True G73710
XM_007228174.3 mRNA upstream 1143 14620471 ~ 14626071 (+) True slc35b4
XM_007228177.3 mRNA upstream 12824 14607589 ~ 14614390 (+) True LOC103028647
XM_007228178.3 mRNA upstream 12824 14608098 ~ 14614390 (+) False LOC103028647
XM_007228171.3 mRNA upstream 21257 14597965 ~ 14605957 (+) False slc25a3
XM_007228185.3 mRNA downstream 108195 14745268 ~ 14754530 (+) True dus2
XM_007228183.3 mRNA downstream 120250 14757323 ~ 14775204 (+) True LOC103030248
XM_007228184.3 mRNA downstream 120250 14757323 ~ 14775204 (+) False LOC103030248
XM_007228191.3 mRNA downstream 139638 14776711 ~ 14786908 (+) True amfr
XM_007228188.3 mRNA downstream 151694 14788767 ~ 14797233 (+) True LOC103031607
XR_002650241.1 other upstream 1729283 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2023790 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4545074 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5477795 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7741673 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 11756 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 254461 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1649603 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3817778 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4445743 19082816 ~ 19085556 (+) True G74832

Expression Profile