RNA id: XM_007228176.3


Basic Information

Item Value
RNA id XM_007228176.3
length 1238
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103028140
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14614391 ~ 14619388 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGGGGGCGGCAGTTTGAATGAATGAGTGGTGATGGCTGGGCCTGCAGCAGCTCCGGGGCTAATTCACACCTCCTCCATATATACAGATACTATAGCTTCTCTCTAATTCAGACAGCTATTCCGACAGTCTCACATAACCTGCTTCTTCAGAGGGGATTCATCAGAGATCGGGATGGGTCTGACGGGCTTCGGCgtgttcttcctcttctttgGGATGATCCTGTTCTTTGATAAAGCTCTGCTGGCCATAGGGAATATCTTGTTTGTTGCAGGCCTCTCCTTCGTTATTGGACTGGAACGAACCTTCAGATTCTTTTTCCAGCGGCACAAAATGAAAGCTACAGGTTTCTTCCTGGGTGGCGTGTTTGTGGTGTTGATCGGGTGGCCAATCATCGGCGTGGTCCTGGAGGTTTATGGGTTCTTCCTTCTCTTTAgGGGCTTTTTCCCAGTCGCGGTCGGCTTTATTAGAAGAATACCAATTCTTGGATCACTGCTCAATCTCCCTGGAATAAGTGGTtTGGTGGATAAAGTTGGCGAGAGCAACACAATGGTATAACGgactttgaaatatttttcatcTTAGGAGTGATCGCCACTTATTTAAAGTTTTCAGCTGTACGCTGATGTATAATTTGATGCCCTTCTGGTAACACTCCCAGTGAATCTCAGACATGAGAAACTCTCATCTTTGAGAGGAGGTGGTGCTTTTATTGGGCACAAGTTGTTACCTATGGAGAGCTGTTATTTTTGGGAACTGATCCACCAGCCCAAATTGGGCCCAGTTATGTGGTTATTACTTTGCTTACCTCCATCATGGAGGTAACATGGACTTGTTGAACCAACAAAGGGCATATTTTGATTGACTGACTGTATAATCATGGCCCATTGGCCTGCTTCTTCTGAAAGGACTGCTACATTCACTATTTCTTTTGTACGCTGTTACATAGAGATCTCTTTAGGTTCTGTATGAAGGTGTTACTGGATCCTTGTGACGCTTTAAGGTGCCAACTGCTTTTTAAAGTGTGCTGTGTTGAATGTGTTACGAGTGCTTTAAACTGGACGAGCCACAACCCATCAACTCATTATGtcactccatttttttttttccagctcaGTCAATTAGTAGCCTTTGTGAAACACACACtttgtaaatatgtattttaaacaatgtataagactgctgtacatttttacatggAGAAAGCCACACTTTAATAAAACTTTCAATATCTGTA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99167 lncRNA downstream 8431 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA downstream 8431 14598454 ~ 14605960 (-) True G73540
TU99124 lncRNA downstream 146250 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 337285 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 542353 14070499 ~ 14072038 (-) True G73434
TU99251 lncRNA upstream 56710 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 89890 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 125999 14745170 ~ 14748658 (-) True G73617
TU99272 lncRNA upstream 137728 14756899 ~ 14757248 (-) True G73622
TU99250 lncRNA upstream 178184 14797355 ~ 14800633 (-) True G73605
XM_007228304.2 mRNA downstream 35873 14574795 ~ 14578518 (-) True LOC103041151
XM_022672170.1 mRNA downstream 40170 14566910 ~ 14574221 (-) True LOC103040849
XM_007228164.3 mRNA downstream 59436 14550872 ~ 14554955 (-) True cib1
XM_007228165.2 mRNA downstream 68855 14542196 ~ 14545536 (-) True LOC103025073
XM_022672168.1 mRNA downstream 154003 14390685 ~ 14460388 (-) True LOC103024229
XM_007228172.3 mRNA upstream 20830 14640001 ~ 14649251 (-) True gpr22
XM_022671917.1 mRNA upstream 68518 14687689 ~ 14690107 (-) True LOC111193055
XM_007228180.3 mRNA upstream 89887 14709058 ~ 14717691 (-) False hbp1
XM_007228179.3 mRNA upstream 89887 14709058 ~ 14715560 (-) True hbp1
XM_007228182.3 mRNA upstream 99383 14718554 ~ 14733253 (-) True prkar2b
TU99163 other downstream 68953 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 1993035 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2049425 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2049517 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2049593 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1142593 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3257855 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3363576 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4320003 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4451767 19070938 ~ 19072888 (-) True G74838

Expression Profile