RNA id: XM_007228177.3


Basic Information

Item Value
RNA id XM_007228177.3
length 1872
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC103028647
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14607589 ~ 14614390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGAGTGGAGTGGCTGAGACTCTGCCCTCCTCTCAGCTCTCACTTTCCCTGCTGCAGCTCTGAGGAAATGACTGGCTGGATGGCTCTGAGGGCACTGTGACACACTGCGACGCCACTGCCAAAGGACTGCAGCAGTCACCTGGTGTTATTCTTAGCTCCACTGTCATGCTGATTACATGGTGGTACTTATACCTGGGGGCTCAGAACATCTACAGACAAGtgtTGAACATGGCATCGGTGCTACAGAAGCTCCTCACCCCCCTGTTCAGTGGCCCCGCCGAGCCACCAAGGAACAAAGTGACAGTTGTAGGAGTGGGTCAAGTTGGCATGGCCTGTGCTGTCAGCATCTTGCTACGGGAGCTTGCTGATGAGCTAGCTCTGGTTGATGTGATGGAGGATAAGCTGAAAGGAGAGATGCTGGACCTGCAGCATGGAAGCCTGTTCCTCAAAACTCCTAAAATTGTCTCGGGCAAAGACTACTCAGTGACAGCAAACTCTCGCATTGTGGTGGTGACAGCAGGTGTGCGTCAACAGGAAGGTGAGAGCAGACTCAATCTGGTGCAGAGAAACGTCAACATCTTCAAACATATCATCCCTCAGATTGTGCGATACAGCCCCAACTGCATCCTCATTGTGGTGTCCAACCCAGTGGATATTTTGACGTACGTGACCTGGAAACTGAGCAGGCTCCCCAAACACCGTGTGATTGGCAGTGGCACTAACCTGGACTCGGCCCGCTTTCGCTACCTCATGGCAGAACGTCTGGGCATCCATCCCACTAGCTTCAATGGCTGGATCTTGGGAGAGCATGGTGACTCTAGTGTTCCTGTTTGGAGCGGCACGAACGTAGCAGGAGTCAGCCTGCAGAAACTGAACCCAGACATCGGCAAAGAAAATGACCGGGAGAACTGGAAGGAGACTCACAGGATGGTAGTTAATAGTGCCTATGAGGTGATCAGACTGAAAGGCTACACTAACTGGGCTATTGGACTGAGCGTAGCCGACCTGACAGAAAGCCTTATTAAAAATCTCAACAGAATCCACCCGGTCTCTACAATGGTGAAGGGCATGTATGGGATCAGTGATGAGGTATACCTCAGCCTGCCATGTGTGCTGAACAGCGGTGGTGTGAGCAGCGTGATCAACATGACTTTGAATCAGGATGAAGTGTCTCAGCTGAAGGACAGCGCTGACACGCTGTGGAACATTCAGAAGGACCTGAAAGATCTGTAACACACTTCAAACAGAGCGCACTTATTCACATCACCACATCAGACCAGCACCTGTAGTCGTAAAGTAGCTTTAGGAAGGAGTACTGATCCAGTCTTCTCCTCCTTCATTCATAATAATGCTAGTAAGGTGAAGGCAATACTGCTATTAATGCAGCACTTTTATCTTTAATGACTTAAGAAATGTATAACACTGGCTGCTATGCGAGATCAAGCTAAACTTTTAAGCTCAGTTGTGTGCAATTTTGCTTCTGTGCAACAATGTATCTGAAATGAAGAATGTAGGTTTTTAcaaaaatgtcattaattatttttaaatgtgatttttaaattaatttttttcatgacatattaaaagaaataaagtttaaaataaaagtttattccAAGTGCCAAATTTGCATTTGGAAGCTGTTCATTGGAACTCTCAGTATGAGGTTCAAACACGATGTCATGATGCTACAAGTTGAGGAGAAAAATCATTTCAGAGAAAAATAATTTGATGTACAGACGCAAATTTACACAAATTGTGTCACTATCTGAATATTTAAGGACCTGACTGTATGTACAAAGACACTTTGCATCCATGTTTTGATTAAGACATGACTGAAGTTCAAAAATAAAGACTTGAAATAAACTGAA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99136 lncRNA upstream 62076 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 282966 14323965 ~ 14324623 (+) True G73468
TU99066 lncRNA upstream 337865 14266776 ~ 14269724 (+) False G73464
TU99154 lncRNA downstream 28 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 23557 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 32053 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 61483 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 230055 14844445 ~ 14844664 (+) True G73598
XM_007228171.3 mRNA upstream 1632 14597965 ~ 14605957 (+) False slc25a3
XM_007228170.3 mRNA upstream 1632 14597965 ~ 14605957 (+) True slc25a3
XM_007228169.3 mRNA upstream 11653 14590603 ~ 14595936 (+) True LOC103026417
XM_007228167.3 mRNA upstream 45052 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA upstream 45052 14556020 ~ 14562537 (+) False LOC103025904
XM_007228174.3 mRNA downstream 6081 14620471 ~ 14626071 (+) True slc35b4
XM_022672172.1 mRNA downstream 12822 14627212 ~ 14637073 (+) False LOC103027493
XM_007228173.3 mRNA downstream 12824 14627214 ~ 14637073 (+) True LOC103027493
XM_007228185.3 mRNA downstream 130878 14745268 ~ 14754530 (+) True dus2
XM_007228183.3 mRNA downstream 142933 14757323 ~ 14775204 (+) True LOC103030248
XR_002650241.1 other upstream 1709658 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2004165 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4525449 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5458170 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7722048 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 34439 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 277144 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1672286 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3840461 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4468426 19082816 ~ 19085556 (+) True G74832

Expression Profile